1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaggttcatcacctaacagacttatgaaactattgtgcacgtatacagtagaaaatgactgtatttttgtaaggaagaatgtttgatgttttgatgtctatgctttccagATAGCATGCTACTTACACCACAGGTACAAGTCAAAAGGGTCGAGCAGTTACAAAAAGAATG
species | Oryza sativa |
transcript | LOC_Os01g18630.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCG ATAGCCATGCTACTTACACCACAGGTACAAGTCAAAAGGGEST: gi|88401360|gb|CI585916.1|CI585916
genomic: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCGgtaggttcat ... tgctttccagATAGC-ATGCTACTTACACCACAGGTACAAGTCAAAAGGG
EST: CACTGGAAGCTCCAACTTGTGGGTTCCATCAGCTGAAATGTTATTTTTCG ATAGCATGCTACTTACACCACAGGEST: gi|38477201|gb|CF961334.1|CF961334
genomic: CACTGGAAGCTCCAACTTGTGGGTTCCATCAG-TGAAATGTTATTTTTCGgtaggttcat ... tgctttccagATAGCATGCTACTTACACCACAGG
EST: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCG ATAGCATGCTACTTACACCACAGGTACAAGTCAAAAGGGTCGAGCAGTTACEST: gi|29631102|gb|CB636111.1|CB636111
genomic: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCGgtaggttcat ... tgctttccagATAGCATGCTACTTACACCACAGGTACAAGTCAAAAGGGTCGAGCAGTTAC
EST: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCG ATAGCATGCTACTTACACCACAGGTACAAGTCAAAAGGGTCGAGCAGTTACEST: gi|33655849|gb|CF278463.1|CF278463
genomic: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCGgtaggttcat ... tgctttccagATAGCATGCTACTTACACCACAGGTACAAGTCAAAAGGGTCGAGCAGTTAC
EST: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCG ATAGCATGCTACTTACACCACAGGTACAAGTCAAAAGGGTCGAGCAGTTACEST: gi|88395139|gb|CI609455.1|CI609455
genomic: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCGgtaggttcat ... tgctttccagATAGCATGCTACTTACACCACAGGTACAAGTCAAAAGGGTCGAGCAGTTAC
EST: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCG ATAGCATGCTACTTACACCACAGGTEST: gi|88453344|gb|CI565786.1|CI565786
genomic: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCGgtaggttcat ... tgctttccagATAGCATGCTACTTACACCACAGGT
EST: ACACTGGAAGCTCCAACTTGTGGGTTC-ATCAGTGAAATGTTATTTTTCG ATAGCATGCTACTTA-ACCACAGGTA-AAGTGAAA-GGGTEST: gi|88390396|gb|CI607432.1|CI607432
genomic: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCGgtaggttcat ... tgctttccagATAGCATGCTACTTACACCACAGGTACAAGTCAAAAGGGT
EST: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCG ATAGCATGCTACTTACACCACAGGTACAAGTCAAAAGGGTCGAGCAGTEST: gi|29670409|gb|CB666684.1|CB666684
genomic: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCGgtaggttcat ... tgctttccagATAGCATGCTACTTACACCACAGGTACAAGTCAAAAGGGTCGAGCAGT
EST: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCG ATAGCATGCTACTTACACCACAGGTACAAGTCAAAAGGGTCGAGCAGTTACEST: gi|2428018|gb|C72481.1|C72481
genomic: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCGgtaggttcat ... tgctttccagATAGCATGCTACTTACACCACAGGTACAAGTCAAAAGGGTCGAGCAGTTAC
EST: CTGGGAAGCTCCAACTTGTGGGGTTCCATCAGTGAAATGTTATTTTTCCG ATAGCATGCTACTTACACCACAGGTACAAGTCNAAAGGGTCGAEST: gi|88416903|gb|CI573618.1|CI573618
genomic: CTGG-AAGCTCCAACTTGTGGG-TTCCATCAGTGAAATGTTATTTTTC-Ggtaggttcat ... tgctttccagATAGCATGCTACTTACACCACAGGTACAAGTCAAAAGGGTCGA
EST: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCG ATAGCATGCTACTTACACCACEST: gi|88395886|gb|CI593088.1|CI593088
genomic: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCGgtaggttcat ... tgctttccagATAGCATGCTACTTACACCAC
EST: ACACTGGAAGCTCCAACTTGTGGGT-CCATCAGTGAAATGTTATTTTTCG ATAGCATGCTACTTACACCACAGGTACAAGTCAAAAGGGTCGEST: gi|88399126|gb|CI603793.1|CI603793
genomic: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCGgtaggttcat ... tgctttccagATAGCATGCTACTTACACCACAGGTACAAGTCAAAAGGGTCG
EST: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCG ATAGCATGCTACTTACACCACAGGTACAEST: gi|88401348|gb|CI585904.1|CI585904
genomic: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCGgtaggttcat ... tgctttccagATAGCATGCTACTTACACCACAGGTACA
EST: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCG ATACCATGCTACTTACACCACAGGEST: gi|33654015|gb|CF276629.1|CF276629
genomic: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCGgtaggttcat ... tgctttccagATAGCATGCTACTTACACCACAGG
EST: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCG ATAGCATGCTACTTACACCACAGGTACAAGTCAAAAGGGTCGAGCAGTTACEST: gi|29635435|gb|CB640444.1|CB640444
genomic: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCGgtaggttcat ... tgctttccagATAGCATGCTACTTACACCACAGGTACAAGTCAAAAGGGTCGAGCAGTTAC
EST: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCG ATAGCATGCTACTTACACCACAGGTACAAGTCAAAAGGGTCGAGCAGTTACEST: gi|29670408|gb|CB666683.1|CB666683
genomic: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCGgtaggttcat ... tgctttccagATAGCATGCTACTTACACCACAGGTACAAGTCAAAAGGGTCGAGCAGTTAC
EST: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCG ATAGCATGCTACTTACACCACAGGTACAAGTCAAAAGGGTCGAGCAGTTAC
genomic: ACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCGgtaggttcat ... tgctttccagATAGCATGCTACTTACACCACAGGTACAAGTCAAAAGGGTCGAGCAGTTAC
tgactgtatttttgtaaggaagaatgtttgatgttttgatgtctatgctttccagATAGCATGCTACTTACACCACAGGTACAAGTCAAAAGGGTCGAGCAGTTACAAAAAGAATG
ttttgat putative branch site (score: 4)
tgctttcc putative PPT
tatttttgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggttcatcacctaacagacttatgaaactattgtgcacgtatacagtagaaaatgactgtatttttgtaaggaagaatgtttgatgttttgatgtctatgctttccagATAGCATGCTACTTACACCACAGGTACAAGTCAAAAGGGTCGAGCAGTTACAAAAAGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA