1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgtgtaaacttttcagagcatggctgcatactaccctactttgttttgtcatctttgctggcagactgatatctaatgtccccgcatgtcttcattacagCGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAATTGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGG
species | Oryza sativa |
transcript | LOC_Os01g16890.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGG CGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAAEST: gi|88302833|gb|CI668679.1|CI668679
genomic: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGGgtaagatgga ... ttcattacagCGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAA
EST: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGG CGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAAEST: gi|88350047|gb|CI621978.1|CI621978
genomic: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGGgtaagatgga ... ttcattacagCGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAA
EST: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGG CGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAAEST: gi|88580500|gb|CI697434.1|CI697434
genomic: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGGgtaagatgga ... ttcattacagCGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAA
EST: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGG CGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAAEST: gi|88331484|gb|CI675819.1|CI675819
genomic: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGGgtaagatgga ... ttcattacagCGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAA
EST: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGG CGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAAEST: gi|88347491|gb|CI637431.1|CI637431
genomic: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGGgtaagatgga ... ttcattacagCGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAA
EST: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGG CGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAAEST: gi|88593163|gb|CI711321.1|CI711321
genomic: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGGgtaagatgga ... ttcattacagCGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAA
EST: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGG CGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAAEST: gi|88305970|gb|CI634967.1|CI634967
genomic: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGGgtaagatgga ... ttcattacagCGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAA
EST: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGG CGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAAEST: gi|88591785|gb|CI709839.1|CI709839
genomic: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGGgtaagatgga ... ttcattacagCGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAA
EST: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGG CGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAAEST: gi|88761833|gb|CI771389.1|CI771389
genomic: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGGgtaagatgga ... ttcattacagCGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAA
EST: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGG CGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAAEST: gi|88588610|gb|CI706439.1|CI706439
genomic: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGGgtaagatgga ... ttcattacagCGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAA
EST: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGG CGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAAEST: gi|88570474|gb|CI661847.1|CI661847
genomic: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGGgtaagatgga ... ttcattacagCGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAA
EST: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGG CGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAAEST: gi|86900722|gb|CI302139.1|CI302139
genomic: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGGgtaagatgga ... ttcattacagCGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAA
EST: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGG CGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAAEST: gi|88405170|gb|CI685624.1|CI685624
genomic: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGGgtaagatgga ... ttcattacagCGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAA
EST: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGG CGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAAEST: gi|86889679|gb|CI299877.1|CI299877
genomic: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGGgtaagatgga ... ttcattacagCGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAA
EST: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGG CGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAAEST: gi|88763053|gb|CI772609.1|CI772609
genomic: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGGgtaagatgga ... ttcattacagCGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAA
EST: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGG CGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAAEST: gi|55413584|gb|CV725960.1|CV725960
genomic: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGGgtaagatgga ... ttcattacagCGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAA
EST: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGG CGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAAEST: gi|88572868|gb|CI664439.1|CI664439
genomic: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGGgtaagatgga ... ttcattacagCGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAA
EST: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGG CGAAGCTATTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAA
genomic: GTACACGCTCGGCTACAAGACCGTCCTCAGGACCCTCAGGAACTCCAAGGgtaagatgga ... ttcattacagCGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAA
ttgtcatctttgctggcagactgatatctaatgtccccgcatgtcttcattacagCGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAATTGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGG
atctaat putative branch site (score: 3)
tcttcatt putative PPT
atatctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgtaaacttttcagagcatggctgcatactaccctactttgttttgtcatctttgctggcagactgatatctaatgtccccgcatgtcttcattacagCGAAGCTAGTGATCATTTCTAACAACTGCCCACCTCTTCGGAAGTCAGAAATTGAGTACTACGCTATGTTGGCCAAGGTCACCGTCCACCATTTCCACGG
- - - - - - - - -gcatggc
- - - - - - - - - - - - tgcatac
- - - - - - - - - - - - - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gctggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccgca