1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ggtcattcatagttatcacattcttcttttagatatgcgctatgtgaagaactgcattgtttctaatcatgatatcattgtttgtttcgctctcttgcagGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGCTG
species | Oryza sativa |
transcript | LOC_Os01g16340.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGACACCAAATCCATCATCGAGCTGCTCCGTGGCCTCGATGCGCCTCCTG GAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGCEST: gi|29660968|gb|CB657243.1|CB657243
genomic: GGACACCAAATCCATCATCGAGCTGCTCCGTGGCCTCGATGCGCCTCCTGgtatgaacag ... tctcttgcagGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGC
EST: AAATCCATCATCGAGCTGCTCCGTGGCCTCGATGCGCCTCCTG GAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGC
genomic: AAATCCATCATCGAGCTGCTCCGTGGCCTCGATGCGCCTCCTGgtatgaacag ... tctcttgcagGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGC
gaagaactgcattgtttctaatcatgatatcattgtttgtttcgctctcttgcagGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGCTG
ttctaat putative branch site (score: 6)
tttgtttcgctctctt putative PPT
tttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtcattcatagttatcacattcttcttttagatatgcgctatgtgaagaactgcattgtttctaatcatgatatcattgtttgtttcgctctcttgcagGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- -cattcat
- - - - - - - - cacattc
- - - - - - - - - - - - - - - - - - - -ctatgtg
- - - - - - - - - - - - - - - - - - - - - - - - -aactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt