1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgtagcagagataagctctatcagaaccacacaaaagaatatcacattcggaaatagaaggagaaatgaactgtgtattattattatttctgtatgagcttagagaaaagaaccgctcctaggatgagctcaacagtgccgtgttttgtgactgaatttgcactcaaacctgcagGTTGGTGGCCCGTACTGGGATGTGCCACTTGGCCGGAGGGACTCACTGGGTGCCAGCATCCAGGGCTCCAACAACGACATCCCAGCTCCCAACAACACCC
species | Oryza sativa |
transcript | LOC_Os01g15830.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTCCTGCGCCGACATACTCGCCCTCGCTGCACGCGATTCCACTGTCCTC GTTGGTGGCCCGTACTGGGATGTGCCACTTGGCCGGAGGGACTCACTGGGTEST: gi|58671509|gb|CK060195.1|CK060195
genomic: TCTCCTGCGCCGACATACTCGCCCTCGCTGCACGCGATTCCACTGTCCTCgtatgtagca ... aaacctgcagGTTGGTGGCCCGTACTGGGATGTGCCACTTGGCCGGAGGGACTCACTGGGT
EST: TCTCCTGCGCCGACATACTCGCCCTCGCTGCACGCGATTCCACTGTCCTC GTTGGTGGCCCGTACTGGGATEST: gi|58597691|gb|CK008219.1|CK008219
genomic: TCTCCTGCGCCGACATACTCGCCCTCGCTGCACGCGATTCCACTGTCCTCgtatgtagca ... aaacctgcagGTTGGTGGCCCGTACTGGGAT
EST: TCTCCTGCGCCGACATACTCGCCCTCGCTGCACGCGATTCCACTGTCCTC GTTGGTGGCCCGTACTGGGATGTGCCACTTGGCCGGAGGGACTCACTGGGTEST: gi|29661940|gb|CB658215.1|CB658215
genomic: TCTCCTGCGCCGACATACTCGCCCTCGCTGCACGCGATTCCACTGTCCTCgtatgtagca ... aaacctgcagGTTGGTGGCCCGTACTGGGATGTGCCACTTGGCCGGAGGGACTCACTGGGT
EST: TCTCCTGCGCCGACATACTCGCCCTCGCTGCACGCGATTCCACTGTCCTC GTTGGTGGCCCGTACTGGGATGTGCCACTTGGCCGGAGGGACTCACTGGGTEST: gi|58683477|gb|CK072164.1|CK072164
genomic: TCTCCTGCGCCGACATACTCGCCCTCGCTGCACGCGATTCCACTGTCCTCgtatgtagca ... aaacctgcagGTTGGTGGCCCGTACTGGGATGTGCCACTTGGCCGGAGGGACTCACTGGGT
EST: TCTCCTGCGCCGACATACTCGCCCTCGCTGCACGCGATTCCACTGTCCTC GTTGGTGGCCCGTACTGGGATGTGCCACTTGGCCGGAGGGACTCACTGGGTEST: gi|58665065|gb|CK053751.1|CK053751
genomic: TCTCCTGCGCCGACATACTCGCCCTCGCTGCACGCGATTCCACTGTCCTCgtatgtagca ... aaacctgcagGTTGGTGGCCCGTACTGGGATGTGCCACTTGGCCGGAGGGACTCACTGGGT
EST: TCTCCTGCGCCGACATACTCGCCCTCGCTGCACGCGATTCCACTGTCCTC GTTGGTGGCCCGTACTGGGATGTGCCACTTGGCCGGAGGGACTCACTGGGTEST: gi|325494554|gb|JG459078.1|JG459078
genomic: TCTCCTGCGCCGACATACTCGCCCTCGCTGCACGCGATTCCACTGTCCTCgtatgtagca ... aaacctgcagGTTGGTGGCCCGTACTGGGATGTGCCACTTGGCCGGAGGGACTCACTGGGT
EST: TCTCCTGCGCCGACATACTCGCCCTCGCTGCACGCGATTCCACTGGCCTC GTTGGTGGCCCGTACTGGGATGTGCCACTTGGCCGGAGGGACTCACTGGGTEST: gi|29661816|gb|CB658091.1|CB658091
genomic: TCTCCTGCGCCGACATACTCGCCCTCGCTGCACGCGATTCCACTGTCCTCgtatgtagca ... aaacctgcagGTTGGTGGCCCGTACTGGGATGTGCCACTTGGCCGGAGGGACTCACTGGGT
EST: TCTCCTGCGCCGACATACTCGCCCTCGCTGCACGCGATTCCACTGTCCTC GTTGGTGGCCCGTACTGGGATGTGCCACTTGGCCGGAGGGACTCACTGGGTEST: gi|58671223|gb|CK059909.1|CK059909
genomic: TCTCCTGCGCCGACATACTCGCCCTCGCTGCACGCGATTCCACTGTCCTCgtatgtagca ... aaacctgcagGTTGGTGGCCCGTACTGGGATGTGCCACTTGGCCGGAGGGACTCACTGGGT
EST: TCTCCTGCGCCGACATACTCGCCCTCGCTGCACGCGATTCCACTGTCCTC GTTGGTGGCCCGTACTGGGATGTGCCACTTGGCCGGAGGGACTCACTGGGTEST: gi|117243971|gb|CT848386.1|CT848386
genomic: TCTCCTGCGCCGACATACTCGCCCTCGCTGCACGCGATTCCACTGTCCTCgtatgtagca ... aaacctgcagGTTGGTGGCCCGTACTGGGATGTGCCACTTGGCCGGAGGGACTCACTGGGT
EST: TCTCCTGCGCCGACATACTCGCCCTCGCTGCACGCGATTCCACTGTCCTC GTTGGTGGCCCGTACTGGGATGTGCCACTTGGCCGGAGGGACTCACTGGGT
genomic: TCTCCTGCGCCGACATACTCGCCCTCGCTGCACGCGATTCCACTGTCCTCgtatgtagca ... aaacctgcagGTTGGTGGCCCGTACTGGGATGTGCCACTTGGCCGGAGGGACTCACTGGGT
aggatgagctcaacagtgccgtgttttgtgactgaatttgcactcaaacctgcagGTTGGTGGCCCGTACTGGGATGTGCCACTTGGCCGGAGGGACTCACTGGGTGCCAGCATCCAGGGCTCCAACAACGACATCCCAGCTCCCAACAACACCC
tgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtagcagagataagctctatcagaaccacacaaaagaatatcacattcggaaatagaaggagaaatgaactgtgtattattattatttctgtatgagcttagagaaaagaaccgctcctaggatgagctcaacagtgccgtgttttgtgactgaatttgcactcaaacctgcagGTTGGTGGCCCGTACTGGGATGTGCCACTTGGCCGGAGGGACTCACTGGGTGCCAGCATCCAGGGCTCCAACAACGACATCCCAGCTCCCAACAACACCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC