1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atgggaatgcttagactattgatgttaacagaaagtattgttatgctatataccctttgtataaatttctaatttggttccagcatttgctgcatcgcagGTTGTTGCAGTTAAACAGCTTGATCTAAATGGGCTTCAGGGAAACAGAGAATTCCTTGTGGAGGTTCTCATGCTCAGTCTCTTGCATCATCCTAATTTAG
species | Oryza sativa |
transcript | LOC_Os01g15470.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCGAGGAGGATTCGGCAGTGTGTATAAAGCATTTCTCAATGATAGACAG GTTGTTGCAGTTAAACAGCTTGATCTAAATGGGCTTCAGGGAAACAGAGAAEST: gi|88351475|gb|CI627491.1|CI627491
genomic: GCCGAGGAGGATTCGGCAGTGTGTATAAAGCATTTCTCAATGATAGACAGgtttgtattt ... tgcatcgcagGTTGTTGCAGTTAAACAGCTTGATCTAAATGGGCTTCAGGGAAACAGAGAA
EST: GCCGAGGAGGATTCGGCAGTGTGTATAAAGCATTTCTCAATGATAGACAG GTTGTTGCAGTTAAACAGCTTGATCTAAATGGGCTTCAGGGAAACAGAGAAEST: gi|29656480|gb|CB652755.1|CB652755
genomic: GCCGAGGAGGATTCGGCAGTGTGTATAAAGCATTTCTCAATGATAGACAGgtttgtattt ... tgcatcgcagGTTGTTGCAGTTAAACAGCTTGATCTAAATGGGCTTCAGGGAAACAGAGAA
EST: GCCGAGGAGGATTCGGCAGTGTGTATAAAGCATTTCTCAATGATAGACAG GTTGTTGCAGTTAAACAGCTTGATCTAAATGGGCTTCAGGGAAACAGAGAAEST: gi|29634752|gb|CB639761.1|CB639761
genomic: GCCGAGGAGGATTCGGCAGTGTGTATAAAGCATTTCTCAATGATAGACAGgtttgtattt ... tgcatcgcagGTTGTTGCAGTTAAACAGCTTGATCTAAATGGGCTTCAGGGAAACAGAGAA
EST: GCCGAGGAGGATTCGGCAGTGTGTATAAAGCATTTCTCAATGATAGACAG GTTGTTGCAGTTAAACAGCTTGATCTAAATGGGCTTCAGGGAAACAGAGAAEST: gi|58692998|gb|CK081685.1|CK081685
genomic: GCCGAGGAGGATTCGGCAGTGTGTATAAAGCATTTCTCAATGATAGACAGgtttgtattt ... tgcatcgcagGTTGTTGCAGTTAAACAGCTTGATCTAAATGGGCTTCAGGGAAACAGAGAA
EST: GCCGAGGAGGATTCGGCAGTGTGTATAAAGCATTTCTCAATGATAGACAG GTTGTTGCAGTTAAACAGCTTGATCTAAATGGGCTTCAGGGAAACAGAGAAEST: gi|29634769|gb|CB639778.1|CB639778
genomic: GCCGAGGAGGATTCGGCAGTGTGTATAAAGCATTTCTCAATGATAGACAGgtttgtattt ... tgcatcgcagGTTGTTGCAGTTAAACAGCTTGATCTAAATGGGCTTCAGGGAAACAGAGAA
EST: GCCGAGGAGGATTCGGCAGTGTGTATAAAGCATTTCTCAATGATAGACAG GTTGTTGCAGTTAAACAGCTTGATCTAAATGGGCTTCAAGGAAACAGAGAAEST: gi|29633081|gb|CB638090.1|CB638090
genomic: GCCGAGGAGGATTCGGCAGTGTGTATAAAGCATTTCTCAATGATAGACAGgtttgtattt ... tgcatcgcagGTTGTTGCAGTTAAACAGCTTGATCTAAATGGGCTTCAGGGAAACAGAGAA
EST: GCCGAGGAGGATTCGGCAGTGTGTATAAAGCATTTCTCAATGATAGACAG GTTGTTGCAGTTAAACAGCTTGATCTAAATGGGCTTCAGGGAAACAGAGAAEST: gi|2317565|gb|C22619.1|C22619
genomic: GCCGAGGAGGATTCGGCAGTGTGTATAAAGCATTTCTCAATGATAGACAGgtttgtattt ... tgcatcgcagGTTGTTGCAGTTAAACAGCTTGATCTAAATGGGCTTCAGGGAAACAGAGAA
EST: GCCGAGGAGGATTCGGCAGTGTGTATAAAGCATTTCTCAATGATAGACAG GTTGTTGCAGTTAAACAGCTTGATCTAAATGGGCTTCAGGGAAACAGAGAA
genomic: GCCGAGGAGGATTCGGCAGTGTGTATAAAGCATTTCTCAATGATAGACAGgtttgtattt ... tgcatcgcagGTTGTTGCAGTTAAACAGCTTGATCTAAATGGGCTTCAGGGAAACAGAGAA
ctatataccctttgtataaatttctaatttggttccagcatttgctgcatcgcagGTTGTTGCAGTTAAACAGCTTGATCTAAATGGGCTTCAGGGAAACAGAGAATTCCTTGTGGAGGTTCTCATGCTCAGTCTCTTGCATCATCCTAATTTAG
ttctaat putative branch site (score: 15)
tttgtataaatttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgggaatgcttagactattgatgttaacagaaagtattgttatgctatataccctttgtataaatttctaatttggttccagcatttgctgcatcgcagGTTGTTGCAGTTAAACAGCTTGATCTAAATGGGCTTCAGGGAAACAGAGAATTCCTTGTGGAGGTTCTCATGCTCAGTCTCTTGCATCATCCTAATTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- -ggaatgc
- - - - - - - - - ttgatgt
- - - - - - - - - - - - - -acagaaa
- - - - - - - - - - - - - - - - - - - - ttatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catttgc