1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...catgggatgccatatttgcctatgctagtctataggtagtaaagcttcgcttgattttggaacatcaaaattaagtagttgctattttttcaaaatgtagTTTGGTGGAGGTGCAAGGAATGCAGCAGCATTGGATTATCCAGAAAGGGCGGGTCAACCTATATGCGAG
species | Oryza sativa |
transcript | LOC_Os01g15460.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGGTGACCGCTGCCGCTACAACCACCCGCGCGATCGCGGCGGCACTGAG TTTGGTGGAGGTGCAAGGAATGCAGCAGCATTGGATTATCCAGAAAGGGCGEST: gi|88306285|gb|CI636670.1|CI636670
genomic: TCGGTGACCGCTGCCGCTACAACCACCCGCGCGATCGCGGCGGCACTGAGgtgagtctcc ... caaaatgtagTTTGGTGGAGGTGCAAGGAATGCAGCAGCATTGGATTATCCAGAAAGGGCG
EST: TCGGTGACCGCTGCCGCTACAACCACCCGCGCGATCGCGGCGGCACTGAG TTTGGTGGAGGTGCAAGGAATGCAGCAGCATTGGATTATCCAGAAAGGGCGEST: gi|88306241|gb|CI636626.1|CI636626
genomic: TCGGTGACCGCTGCCGCTACAACCACCCGCGCGATCGCGGCGGCACTGAGgtgagtctcc ... caaaatgtagTTTGGTGGAGGTGCAAGGAATGCAGCAGCATTGGATTATCCAGAAAGGGCG
EST: TCGGTGACCGCTGCCGCTACAACCACCCGCGCGATCGCGGCGGCACTGAG TTTGGTGGAGGTGCAAGGAATGCAGCAGCATTGGATTATCCAGAAAGGGCG
genomic: TCGGTGACCGCTGCCGCTACAACCACCCGCGCGATCGCGGCGGCACTGAGgtgagtctcc ... caaaatgtagTTTGGTGGAGGTGCAAGGAATGCAGCAGCATTGGATTATCCAGAAAGGGCG
ttcgcttgattttggaacatcaaaattaagtagttgctattttttcaaaatgtagTTTGGTGGAGGTGCAAGGAATGCAGCAGCATTGGATTATCCAGAAAGGGCGGGTCAACCTATATGCGAG
gcttgat putative branch site (score: 49)
ctattttttc putative PPT
tattttttcaaaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgggatgccatatttgcctatgctagtctataggtagtaaagcttcgcttgattttggaacatcaaaattaagtagttgctattttttcaaaatgtagTTTGGTGGAGGTGCAAGGAATGCAGCAGCATTGGATTATCCAGAAAGGGCGGGTCAACCTATATGCGAG
- -gggatgc
- - - - - - - - - cctatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catcaaa