1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacaaacctcttaaatgttttgggctgttaccttgtgaaaataatagttgaacaaaagttaattactaattacacccattacaatttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATTCGTGCAGTTTCTTACCAGAGAGGATTTCCCCCAGCTACAG
species | Oryza sativa |
transcript | LOC_Os01g14950.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|58690748|gb|CK079435.1|CK079435
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: TAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|33678037|gb|CF306276.1|CF306276
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|29662761|gb|CB659036.1|CB659036
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|58668036|gb|CK056722.1|CK056722
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|58608932|gb|CK036965.1|CK036965
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: GTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTGCGTAGATEST: gi|58669030|gb|CK057716.1|CK057716
genomic: GTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|88369398|gb|CI580420.1|CI580420
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAAACTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|29622103|gb|CB627114.1|CB627114
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|58657036|gb|CK045716.1|CK045716
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|29677816|gb|CB674091.1|CB674091
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|58676136|gb|CK064823.1|CK064823
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|58676728|gb|CK065415.1|CK065415
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|58676970|gb|CK065657.1|CK065657
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|29662174|gb|CB658449.1|CB658449
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|29680121|gb|CB676396.1|CB676396
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|29643710|gb|CB648717.1|CB648717
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|58684235|gb|CK072922.1|CK072922
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|29633763|gb|CB638772.1|CB638772
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAAGCGTTGTTCCTAGATEST: gi|29629650|gb|CB634659.1|CB634659
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|33795122|gb|CF323434.1|CF323434
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGGCGTTGTTCCTAGAEST: gi|29676485|gb|CB672760.1|CB672760
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGG-CGTTGTTCCTAGA
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|88433725|gb|CI582047.1|CI582047
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTACATEST: gi|66912883|gb|CX099731.1|CX099731
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|88405699|gb|CI609598.1|CI609598
genomic: CAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTC-GCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTEST: gi|29681891|gb|CB678166.1|CB678166
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGT
EST: CAACCTTCATCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCGATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|58675322|gb|CK064009.1|CK064009
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|58695850|gb|CK084537.1|CK084537
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|58680439|gb|CK069126.1|CK069126
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|58670840|gb|CK059526.1|CK059526
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|58681521|gb|CK070208.1|CK070208
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|58689500|gb|CK078187.1|CK078187
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: TAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|29677719|gb|CB673994.1|CB673994
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATEST: gi|88403709|gb|CI611364.1|CI611364
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGAT
EST: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAG AGAGGAGCCCTCCAATTGAAGAGG
genomic: CAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacct ... ttttaattagAGAGGAGCCCTCCAATTGAAGAGG
ataatagttgaacaaaagttaattactaattacacccattacaatttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATTCGTGCAGTTTCTTACCAGAGAGGATTTCCCCCAGCTACAG
tactaat putative branch site (score: 176)
ttttt putative PPT
aacaaaagttaattac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaaacctcttaaatgttttgggctgttaccttgtgaaaataatagttgaacaaaagttaattactaattacacccattacaatttttaattagAGAGGAGCCCTCCAATTGAAGAGGTTATTCAATCAGGCGTTGTTCCTAGATTCGTGCAGTTTCTTACCAGAGAGGATTTCCCCCAGCTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT