1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagtctatcatgatgagaagtttaatttcttccatgtgccatgtaaatttgactttgttgtaacatgtcgaactgaatggtaaatccagGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATAATTGTCACAACTACTGGTGGCAGAAATGGTCAGCCGAAACAG
species | Oryza sativa |
transcript | LOC_Os01g14860.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAG GAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATAEST: gi|58685932|gb|CK074619.1|CK074619
genomic: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAGgtaagtctat ... gtaaatccagGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATA
EST: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAG GAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATAEST: gi|58661642|gb|CK050322.1|CK050322
genomic: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAGgtaagtctat ... gtaaatccagGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATA
EST: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAG GAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATAEST: gi|58598975|gb|CK009503.1|CK009503
genomic: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAGgtaagtctat ... gtaaatccagGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATA
EST: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAG GAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATAEST: gi|58674441|gb|CK063127.1|CK063127
genomic: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAGgtaagtctat ... gtaaatccagGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATA
EST: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAG GAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATAEST: gi|58665294|gb|CK053980.1|CK053980
genomic: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAGgtaagtctat ... gtaaatccagGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATA
EST: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAG GAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATAEST: gi|58676495|gb|CK065182.1|CK065182
genomic: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAGgtaagtctat ... gtaaatccagGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATA
EST: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAG GAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATAEST: gi|58665103|gb|CK053789.1|CK053789
genomic: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAGgtaagtctat ... gtaaatccagGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATA
EST: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAG GAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATAEST: gi|29687086|gb|CB683361.1|CB683361
genomic: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAGgtaagtctat ... gtaaatccagGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATA
EST: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAG GAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATAEST: gi|58664372|gb|CK053058.1|CK053058
genomic: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAGgtaagtctat ... gtaaatccagGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATA
EST: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAG GAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATAEST: gi|58673516|gb|CK062202.1|CK062202
genomic: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAGgtaagtctat ... gtaaatccagGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATA
EST: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAG GAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATAEST: gi|58671331|gb|CK060017.1|CK060017
genomic: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAGgtaagtctat ... gtaaatccagGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATA
EST: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAG GAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATAEST: gi|58657986|gb|CK046666.1|CK046666
genomic: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAGgtaagtctat ... gtaaatccagGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATA
EST: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAG GAAGTTGAAGCGACTATTATTAACGGCAAGGGAGCAGAAACCGGCCACATAEST: gi|58590979|gb|CF989287.1|CF989287
genomic: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAGgtaagtctat ... gtaaatccagGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATA
EST: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAG GAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGCAAA-CGGCCACATEST: gi|58653056|gb|CK041736.1|CK041736
genomic: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAGgtaagtctat ... gtaaatccagGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAG-AAACCGGCCACAT
EST: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAG GAAGTTGAAGCGACTATTAGGGACGGCAAGGGAACAGAAACCGGCCACATAEST: gi|29618976|gb|CB623988.1|CB623988
genomic: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAGgtaagtctat ... gtaaatccagGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATA
EST: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAG GAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATAEST: gi|58653567|gb|CK042247.1|CK042247
genomic: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAGgtaagtctat ... gtaaatccagGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATA
EST: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAG GAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGACACATAEST: gi|163921584|gb|EG712155.1|EG712155
genomic: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAGgtaagtctat ... gtaaatccagGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATA
EST: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAG GAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATAEST: gi|86596734|gb|CI286647.1|CI286647
genomic: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAGgtaagtctat ... gtaaatccagGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATA
EST: CCGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAG GAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATAEST: gi|33796677|gb|CF324206.1|CF324206
genomic: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAGgtaagtctat ... gtaaatccagGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATA
EST: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAG GAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATA
genomic: CTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAGgtaagtctat ... gtaaatccagGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATA
tgtgccatgtaaatttgactttgttgtaacatgtcgaactgaatggtaaatccagGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATAATTGTCACAACTACTGGTGGCAGAAATGGTCAGCCGAAACAG
ttgtaac putative branch site (score: 2)
atgtaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctatcatgatgagaagtttaatttcttccatgtgccatgtaaatttgactttgttgtaacatgtcgaactgaatggtaaatccagGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATAATTGTCACAACTACTGGTGGCAGAAATGGTCAGCCGAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG