1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aaatttcatccttctttatggaacaatcagtttacttaactaatgatagttgttactaaattttttggattaaaactgaagatttcttcattgattccagCTTCCTCATCAAAATATTACATTAGAAGCATCTTGGCCTGGATTATTCATTGATAAAAACGGGGTTTACTGGGATGTGCCATTGTCATTATCAGCTGACC
species | Oryza sativa |
transcript | LOC_Os01g14820.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTACAATCTGAAGAAGGGGGATCGGGGCAAAGCAATATTTCGACACAAG CTTCCTCATCAAAATATTACATTAGAAGCATCTTGGCCCTGGATTATTCATEST: gi|58662557|gb|CK051243.1|CK051243
genomic: TGTACAATCTGAAGAAGGGGGATCGGGGCAAAGCAATATTTCGACACAAGgcaaattatc ... ttgattccagCTTCCTCATCAAAATATTACATTAGAAGCATCTTGGCC-TGGATTATTCAT
EST: TGTACAATCTGAAGAAGGGGGATCGGGGCAAAGCAATATTTCGACACAAG CTTCCTCATCAAAATATTACATTAGAAGCATCTTGGCCTGGATTATTCATTEST: gi|33683900|gb|CF312139.1|CF312139
genomic: TGTACAATCTGAAGAAGGGGGATCGGGGCAAAGCAATATTTCGACACAAGgcaaattatc ... ttgattccagCTTCCTCATCAAAATATTACATTAGAAGCATCTTGGCCTGGATTATTCATT
EST: TTCGACACAAG CEST: gi|33683900|gb|CF312139.1|CF312139
genomic: TTCGACACAAGgcaaattatc ... ttgattccag-
EST: TTCGACACAAG CEST: gi|218497802|gb|FG961687.1|FG961687
genomic: TTCGACACAAGgcaaattatc ... ttgattccag-
EST: TGTACAATCTGAAGAAGGGGGATCGGGGCAAAGCAATAGTTCGACACAAG CTTCCTCATCAAAATATTACATTAGAAGCATCTTGGCCTGGATTATTCATT
genomic: TGTACAATCTGAAGAAGGGGGATCGGGGCAAAGCAATATTTCGACACAAGgcaaattatc ... ttgattccagCTTCCTCATCAAAATATTACATTAGAAGCATCTTGGCCTGGATTATTCATT
atagttgttactaaattttttggattaaaactgaagatttcttcattgattccagCTTCCTCATCAAAATATTACATTAGAAGCATCTTGGCCTGGATTATTCATTGATAAAAACGGGGTTTACTGGGATGTGCCATTGTCATTATCAGCTGACC
tttcttcatt CT-rich tract
ttactaaattttttgg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatttcatccttctttatggaacaatcagtttacttaactaatgatagttgttactaaattttttggattaaaactgaagatttcttcattgattccagCTTCCTCATCAAAATATTACATTAGAAGCATCTTGGCCTGGATTATTCATTGATAAAAACGGGGTTTACTGGGATGTGCCATTGTCATTATCAGCTGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - ttcatcc
- - - - - - - - - - gaacaat
- - - - - - - - - - - - - - - - - - - - - - - - - tgttact