1 5' 3' | 2 5' 3' | 3 5' 3' |
gtattcttttatcttataattgcacctcgtttgtttcatctttgtgactgtctacctgagaaaacgaagaacacctcgattgatttctgtctttgtgtgtgttcagGAGAAGCACGAAGCTGGCAGCAATGGCGCCCTGCACCCATCAAACGGGCAAGCAAAGCAGCCGCCGTCGCCGCCGCAGAAGCAGAAGCAGAAGCTGCTCT
species | Oryza sativa |
transcript | LOC_Os01g12810.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGGCAAGATAAGAATCAATGGAGAAGTGCTAAACGGATCACACCTCAAA GAGAAGCACGAAGCTGGCAGCAATGGCGCCCTGCACCCATCAAACGGGCAAEST: gi|58669267|gb|CK057953.1|CK057953
genomic: ATGGCAAGATAAGAATCAATGGAGAAGTGCTAAACGGATCACACCTCAAAgtattctttt ... gtgtgttcagGAGAAGCACGAAGCTGGCAGCAATGGCGCCCTGCACCCATCAAACGGGCAA
EST: ATGGCAAGATAAGAATCAATGGAGAAGTGCTAAACGGATCACACCTCAAA GAGAAGCACGAAGCTGGCAGCAATGGCGCCCTGCACCCATCAAACGGGCAAEST: gi|87010971|gb|CI286046.1|CI286046
genomic: ATGGCAAGATAAGAATCAATGGAGAAGTGCTAAACGGATCACACCTCAAAgtattctttt ... gtgtgttcagGAGAAGCACGAAGCTGGCAGCAATGGCGCCCTGCACCCATCAAACGGGCAA
EST: ATGGCAAGATAAGAATCAATGGAGAAGTGCTAAACGGATCACACCTCAAA GAGAAGCACGAAGCTGGCAGCAATGGCGCCCTGCACCCATCAAACGGGCAAEST: gi|29646622|gb|CB651629.1|CB651629
genomic: ATGGCAAGATAAGAATCAATGGAGAAGTGCTAAACGGATCACACCTCAAAgtattctttt ... gtgtgttcagGAGAAGCACGAAGCTGGCAGCAATGGCGCCCTGCACCCATCAAACGGGCAA
EST: ATGGCAAGATAAGAATCAATGGAGAAGTGCTAAACGGATCACACCTCAAA GAGAAGCACGAAGCTGGCAGCAATGGCGCCCTGCACCCATCAAACGGGCAA
genomic: ATGGCAAGATAAGAATCAATGGAGAAGTGCTAAACGGATCACACCTCAAAgtattctttt ... gtgtgttcagGAGAAGCACGAAGCTGGCAGCAATGGCGCCCTGCACCCATCAAACGGGCAA
ctacctgagaaaacgaagaacacctcgattgatttctgtctttgtgtgtgttcagGAGAAGCACGAAGCTGGCAGCAATGGCGCCCTGCACCCATCAAACGGGCAAGCAAAGCAGCCGCCGTCGCCGCCGCAGAAGCAGAAGCAGAAGCTGCTCT
gattgat putative branch site (score: 13)
attgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcttttatcttataattgcacctcgtttgtttcatctttgtgactgtctacctgagaaaacgaagaacacctcgattgatttctgtctttgtgtgtgttcagGAGAAGCACGAAGCTGGCAGCAATGGCGCCCTGCACCCATCAAACGGGCAAGCAAAGCAGCCGCCGTCGCCGCCGCAGAAGCAGAAGCAGAAGCTGCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT