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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcctgaaccgcctaaagctagcgataatcatgcaactttgtctcaaaaccgaaggcatttcctttattgctaatttattagaccttttttttttgtggactgaaaatggaattgaattggcagGATAAATGAGCTCGAGGAAATTGCGCAGGCTAGAAACTCGGTCGATGCTAGCACGCAAGGACCTGACTCGTCTTCAGCAAAATTGTCATCAGAGCCTGAT

Basic information

species Oryza sativa
transcript LOC_Os01g12670.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88587845|gb|CI705625.1|CI705625
EST:     CGGGAGCATGTGGGGAGGCTGCAGGAAACCATCGAATTAGCCACTGCAGT                         GATAAATGAGCTCGAGGAAATTGCGCAGGCTACAAACT
genomic: -GGGAGCATGTGGGGAGGCTGCAGGAAACCATCGAATTAGCCACTGCAGTgtgagttcct ... gaattggcagGATAAATGAGCTCGAGGAAATTGCGCAGGCTAGAAACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctaatttattagaccttttttttttgtggactgaaaatggaattgaattggcagGATAAATGAGCTCGAGGAAATTGCGCAGGCTAGAAACTCGGTCGATGCTAGCACGCAAGGACCTGACTCGTCTTCAGCAAAATTGTCATCAGAGCCTGAT
 tgctaat  putative branch site (score: 2)
     tttattagaccttttt  TA-rich tract