1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttcagtggttagaaacaaggcttctttctccttttctagtaaatctcataattgactgttattgctttcagtattaacaaagtatggatgtttcctacagGATATTCAGAGCCCAACCGAGTTGCAGTCATCAGCACAAGGTACTAATGAAGTGCAAAGTAACCAGCCGAATCCAATGGCCACTGATGGTCCTGGAGGAG
species | Oryza sativa |
transcript | LOC_Os01g12080.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAAGGATTCTCAG GATATTCAGAGCCCAACCGAGTTGCAGTCATCAGCACAAGGTACTAATGAAEST: gi|88346428|gb|CI635906.1|CI635906
genomic: TGAAGGATTCTCAGgtgatttttg ... tttcctacagGATATTCAGAGCCCAACCGAGTTGCAGTCATCAGCACAAGGTACTAATGAA
EST: ATGTTGCAATGAAGGATTCTCAG GATATCCAGAGCCCAACCGAGTTGCAGTCATCACCACAAGGTACTAATGAAEST: gi|88342702|gb|CI657196.1|CI657196
genomic: ATGTTGCAATGAAGGATTCTCAGgtgatttttg ... tttcctacagGATATTCAGAGCCCAACCGAGTTGCAGTCATCAGCACAAGGTACTAATGAA
EST: ATGTTGCAATGAAGGATTCTCAG GATATTCAGAGCCCAACCGAGTTGCAGTCATCAGCACAAGGTACTAATGAAEST: gi|58590445|gb|CF988753.1|CF988753
genomic: ATGTTGCAATGAAGGATTCTCAGgtgatttttg ... tttcctacagGATATTCAGAGCCCAACCGAGTTGCAGTCATCAGCACAAGGTACTAATGAA
EST: TGCAATGAAGGATTCTCAG GATATTCAGAGCCCAACCGAGTTGCAGTCATCAGCACAAGGTACTAATGAA
genomic: TGCAATGAAGGATTCTCAGgtgatttttg ... tttcctacagGATATTCAGAGCCCAACCGAGTTGCAGTCATCAGCACAAGGTACTAATGAA
tcataattgactgttattgctttcagtattaacaaagtatggatgtttcctacagGATATTCAGAGCCCAACCGAGTTGCAGTCATCAGCACAAGGTACTAATGAAGTGCAAAGTAACCAGCCGAATCCAATGGCCACTGATGGTCCTGGAGGAG
tattaac putative branch site (score: 42)
tgtttcct putative PPT
tattaacaaagtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcagtggttagaaacaaggcttctttctccttttctagtaaatctcataattgactgttattgctttcagtattaacaaagtatggatgtttcctacagGATATTCAGAGCCCAACCGAGTTGCAGTCATCAGCACAAGGTACTAATGAAGTGCAAAGTAACCAGCCGAATCCAATGGCCACTGATGGTCCTGGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - agaaaca
- - - - - - - - - ggcttct
- - - - - - - - - - - - - - - - - - - - - - - - - -ttgactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atggatg