1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aatttagtggtagcaaacatgcctgcacttcaaattgttgattttgttgtgattactttgaaaattttctgagaagttacttttcatttttcctgtgcagTCACTTGTAGTTTTCGTCAGACCCATCAAATTTGCAGTCATGTTTACATTTGGAAACATCCTAGCAGTTGGGAG
species | Oryza sativa |
transcript | LOC_Os01g11980.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTACGGCTTCGCCGCGTGCTTGGTTGCGGGACTGGCTCTGATGATCCTG TCACTTGTAGTTTTCGTCAGACCCATCAAATTTGCAGTCATGTTTACATTTEST: gi|88303244|gb|CI668892.1|CI668892
genomic: TCTACGGCTTCGCCGCGTGCTTGGTTGCGGGACTGGCTCTGATGATCCTGgtacgcacgc ... tcctgtgcagTCACTTGTAGTTTTCGTCAGACCCATCAAATTTGCAGTCATGTTTACATTT
EST: TCTACGGCTTCGCCGCGTGCTTGGTTGCGGGACTGGCTCTGATGATCCTG TCACTTGTAGTTTTCGTCAGACCCATCAAATTTGCAGTCATGTTTACATTTEST: gi|33660828|gb|CF291795.1|CF291795
genomic: TCTACGGCTTCGCCGCGTGCTTGGTTGCGGGACTGGCTCTGATGATCCTGgtacgcacgc ... tcctgtgcagTCACTTGTAGTTTTCGTCAGACCCATCAAATTTGCAGTCATGTTTACATTT
EST: TCTACGGCTTCGCCGCGTGCTTGGTTGCGGGACTGGCTCTGATGATCCTG TCACTTGTAGTTTTCGTCAGACCCATCAAATTTGCAGTCAT-TTTACATTT
genomic: TCTACGGCTTCGCCGCGTGCTTGGTTGCGGGACTGGCTCTGATGATCCTGgtacgcacgc ... tcctgtgcagTCACTTGTAGTTTTCGTCAGACCCATCAAATTTGCAGTCATGTTTACATTT
gttgtgattactttgaaaattttctgagaagttacttttcatttttcctgtgcagTCACTTGTAGTTTTCGTCAGACCCATCAAATTTGCAGTCATGTTTACATTTGGAAACATCCTAGCAGTTGGGAG
ttacttttcatttttc CT-rich tract
attactttgaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatttagtggtagcaaacatgcctgcacttcaaattgttgattttgttgtgattactttgaaaattttctgagaagttacttttcatttttcctgtgcagTCACTTGTAGTTTTCGTCAGACCCATCAAATTTGCAGTCATGTTTACATTTGGAAACATCCTAGCAGTTGGGAG
- - - - - - gcaaaca
- - - - - - - - - -tgcctgc
- - - - - - - - - - - - - - - - - ttgttga
- - - - - - - - - - - - - - - - - - - - - -ttgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctga