1 5' 3' | 2 5' 3' | 3 5' 3' |
gttagtcgttgccgccgccctcgccgccgccgacgacgacgaatcaatgcaccgtcctaactaattccggtggtggttttgggtgacgatcagAGTGCAGGGACCTGTTCCGGCGATCTCTGTTCATCGTGGGGGAGTTCGGCGGCAACGACTACAACTCGCCGCTGTTCGCGTTCCGGCCACTGGAGGAGGT
species | Oryza sativa |
transcript | LOC_Os01g11650.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATCAAGTGGTTCCAGGACATGAAGGCCTCCATCTGCAAGTCCCCTCAAG AGTGCAGGGACCTGTTCCGGCGATCTCTGTTCATCGTGGGGGAGTTCGGCGEST: gi|29613920|gb|CB618933.1|CB618933
genomic: GATCAAGTGGTTCCAGGACATGAAGGCCTCCATCTGCAAGTCCCCTCAAGgttagtcgtt ... tgacgatcagAGTGCAGGGACCTGTTCCGGCGATCTCTGTTCATCGTGGGGGAGTTCGGCG
EST: GATCAAGTGGTTCCAGGACATGAAGGCCTCCATCTGCAAGTCCCCTCAAG AGTGCAGGGACCTGTTCCGGCGATCTCTGTTCATCGTGGGGGAGTTCGGCGEST: gi|58687715|gb|CK076402.1|CK076402
genomic: GATCAAGTGGTTCCAGGACATGAAGGCCTCCATCTGCAAGTCCCCTCAAGgttagtcgtt ... tgacgatcagAGTGCAGGGACCTGTTCCGGCGATCTCTGTTCATCGTGGGGGAGTTCGGCG
EST: GATCAAGTGGTTCCAGGACATGAAGGCCTCCATCTGCAAGTCCCCTCAAG AGTGCAGGGACCTGTTCCGGCGATCTCTGTTCATCGTGGGGGAGTTCGGCGEST: gi|29638553|gb|CB643562.1|CB643562
genomic: GATCAAGTGGTTCCAGGACATGAAGGCCTCCATCTGCAAGTCCCCTCAAGgttagtcgtt ... tgacgatcagAGTGCAGGGACCTGTTCCGGCGATCTCTGTTCATCGTGGGGGAGTTCGGCG
EST: GATCAAGTGGTTCCAGGACATGAAGGCCTCCATCTGCAAGTCCCCTCAAG AGTGCAGGGACCTGTTCCGGCGATCTCTGTTCATCGTGGGGGAGTTCGGCGEST: gi|117238603|gb|CT842448.1|CT842448
genomic: GATCAAGTGGTTCCAGGACATGAAGGCCTCCATCTGCAAGTCCCCTCAAGgttagtcgtt ... tgacgatcagAGTGCAGGGACCTGTTCCGGCGATCTCTGTTCATCGTGGGGGAGTTCGGCG
EST: GATCAAGTGGTTCCAGGACATGAAGGCCTCCATCTGCAAGTCCCCTCAAG AGTGCAGGGACCTGTTCCGGCGATCTCTGTTCATCGTGGGGGAGTTCGGCGEST: gi|25802817|gb|CA758778.1|CA758778
genomic: GATCAAGTGGTTCCAGGACATGAAGGCCTCCATCTGCAAGTCCCCTCAAGgttagtcgtt ... tgacgatcagAGTGCAGGGACCTGTTCCGGCGATCTCTGTTCATCGTGGGGGAGTTCGGCG
EST: GATCAAGTGGTTCCAGGACATGAAGGCCTCCATCTGCAAGTCCCCTCAAG AGTGCAGGGACCTGTTCCGGCGATCTCTGTTCATCGTGGGGGAGTTCGGCGEST: gi|29669794|gb|CB666069.1|CB666069
genomic: GATCAAGTGGTTCCAGGACATGAAGGCCTCCATCTGCAAGTCCCCTCAAGgttagtcgtt ... tgacgatcagAGTGCAGGGACCTGTTCCGGCGATCTCTGTTCATCGTGGGGGAGTTCGGCG
EST: GATCAAGTGGTTCCAGGACATGAAGGCCTCCATCTGCAAGTCCCCTCAAG AGTGCAGGGACCTGTTCCGGCGATCTCTGTTCATCGTGGGGGAGTTCGGCG
genomic: GATCAAGTGGTTCCAGGACATGAAGGCCTCCATCTGCAAGTCCCCTCAAGgttagtcgtt ... tgacgatcagAGTGCAGGGACCTGTTCCGGCGATCTCTGTTCATCGTGGGGGAGTTCGGCG
acgaatcaatgcaccgtcctaactaattccggtggtggttttgggtgacgatcagAGTGCAGGGACCTGTTCCGGCGATCTCTGTTCATCGTGGGGGAGTTCGGCGGCAACGACTACAACTCGCCGCTGTTCGCGTTCCGGCCACTGGAGGAGGT
taactaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtcgttgccgccgccctcgccgccgccgacgacgacgaatcaatgcaccgtcctaactaattccggtggtggttttgggtgacgatcagAGTGCAGGGACCTGTTCCGGCGATCTCTGTTCATCGTGGGGGAGTTCGGCGGCAACGACTACAACTCGCCGCTGTTCGCGTTCCGGCCACTGGAGGAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG