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...tgcagattctataaaatatgcacatttgtggcttggttaatttcttctgttgtgaatcttatgtattaacaaaatatgtgtgtttataattttctggcagATTTGTCTTTGGTGTTGGCATCAGATAATGGAAATGGATCAGAAGGAAGAATGTGGCGGGAGATGCCCCGCGTGTCGTTCTATCTACAACAAGGACAGGA
species | Oryza sativa |
transcript | LOC_Os01g11130.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGATGGATTTGACAGATAAACAGCTGAAGCCGTGTAAATGTGGATATGAG ATTTGTCTTTGGTGTTGGCATCAGATAATGGAAATGGATCAGAAGGAAGAAEST: gi|88727873|gb|CI749385.1|CI749385
genomic: AGATGGATTTGACAGATAAACAGCTGAAGCCGTGTAAATGTGGATATGAGgtgaaaattc ... tttctggcagATTTGTCTTTGGTGTTGGCATCAGATAATGGAAATGGATCAGAAGGAAGAA
EST: AGATGGATTTGACAGATAAACAGCTGAAGCCGTGTAAATGTGGATATGAG ATTTGTCTTTGGTGTTGGCATCAGATAATGGAAATGGATCAGAAGGAAGAA
genomic: AGATGGATTTGACAGATAAACAGCTGAAGCCGTGTAAATGTGGATATGAGgtgaaaattc ... tttctggcagATTTGTCTTTGGTGTTGGCATCAGATAATGGAAATGGATCAGAAGGAAGAA
tctgttgtgaatcttatgtattaacaaaatatgtgtgtttataattttctggcagATTTGTCTTTGGTGTTGGCATCAGATAATGGAAATGGATCAGAAGGAAGAATGTGGCGGGAGATGCCCCGCGTGTCGTTCTATCTACAACAAGGACAGGA
tattaac putative branch site (score: 2)
ttttct putative PPT
ttatgtattaacaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcagattctataaaatatgcacatttgtggcttggttaatttcttctgttgtgaatcttatgtattaacaaaatatgtgtgtttataattttctggcagATTTGTCTTTGGTGTTGGCATCAGATAATGGAAATGGATCAGAAGGAAGAATGTGGCGGGAGATGCCCCGCGTGTCGTTCTATCTACAACAAGGACAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
tgcagat
- - - - - - - - tatgcac
- - - - - - - - - - - - - - tggcttg
- - - - - - - - - - - - - - - - - - - - - - - - - -gtgaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttt