1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagtagttgaggatttttctaagcatgcatacgtattctagaggagctgttatgtctgatgagctgagcatctgttagGTGACGGAGGAGAGACTTGCTGATATATTTGCTAACTGTGGGCAA
species | Oryza sativa |
transcript | LOC_Os01g11120.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGAAGACAGCATTCGGCGAACTGTTTATGTTTCTGATATTGACCATACT GTGACGGAGGAGAGACTTGCTGATATATTTGCTAACTGTGGGCAAEST: gi|58683119|gb|CK071806.1|CK071806
genomic: GGGAAGACAGCATTCGGCGAACTGTTTATGTTTCTGATATTGACCATACTgtgagtagtt ... catctgttagGTGACGGAGGAGAGACTTGCTGATATATTTGCTAACTGTGGGCAA
EST: GGGAAGACAGCATTCGGCGAACTGTTTATGTTTCTGATATTGACCATACT GTGACGGAGGAAAGACTTGCTGATATATTTGCTAACTGTGGGCAAEST: gi|29678318|gb|CB674593.1|CB674593
genomic: GGGAAGACAGCATTCGGCGAACTGTTTATGTTTCTGATATTGACCATACTgtgagtagtt ... catctgttagGTGACGGAGGAGAGACTTGCTGATATATTTGCTAACTGTGGGCAA
EST: GGGAAGACAGCATTCGGCGAACTGTTTATGTTTCTGATATTGACCATACT GTGACGGAGGAGAGACTTGCTGATATATTTGCTAAEST: gi|58689203|gb|CK077890.1|CK077890
genomic: GGGAAGACAGCATTCGGCGAACTGTTTATGTTTCTGATATTGACCATACTgtgagtagtt ... catctgttagGTGACGGAGGAGAGACTTGCTGATATATTTGCTAA
EST: GGGAAGACAGCATTCGGCGAACTGTTTATGTTTCTGATATTGACCATACT GTGACGGAGGAAAGACTTGCTGATATATTTGCTAACTGTGGGCAA
genomic: GGGAAGACAGCATTCGGCGAACTGTTTATGTTTCTGATATTGACCATACTgtgagtagtt ... catctgttagGTGACGGAGGAGAGACTTGCTGATATATTTGCTAACTGTGGGCAA
catgcatacgtattctagaggagctgttatgtctgatgagctgagcatctgttagGTGACGGAGGAGAGACTTGCTGATATATTTGCTAACTGTGGGCAA
gtctgat putative branch site (score: 18)
tattcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtagttgaggatttttctaagcatgcatacgtattctagaggagctgttatgtctgatgagctgagcatctgttagGTGACGGAGGAGAGACTTGCTGATATATTTGCTAACTGTGGGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT