1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaaggtttcccttttatggatatttcccttaatcattggataaatgaaacatcctaaccacaactaactagttactaattctttttagGTTGCTTCAGGAGTTCGTCAACAAACATGGGGCTGATCTTAAAGTGATTTACAGTGTGTCTGGATGGTTAAAGAAGAACCCCACAAATTATTGTGTAAAA
species | Oryza sativa |
transcript | LOC_Os01g10690.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TACAAATGGCTCAGCAGGAACTTCTCAGTATCATCCAATGATTCAAAGAG GTTGCTTCAGGAGTTCGTCAACAAACATGGGGCTGATCTTAAAGTGATTTAEST: gi|88731234|gb|CI754847.1|CI754847
genomic: TACAAATGGCTCAGCAGGAACTTCTCAGTATCATCCAATGATTCAAAGAGgtaaaggttt ... ttctttttagGTTGCTTCAGGAGTTCGTCAACAAACATGGGGCTGATCTTAAAGTGATTTA
EST: TACAAATGGCTCAGCAGGAACTTCTCAGTATCATCCAATGATTCAAAGAG GTTGCTTCAGGAGTTCGTCAACAAACATGGGGCTGATCTTAAAGTGATTTAEST: gi|88717869|gb|CI739381.1|CI739381
genomic: TACAAATGGCTCAGCAGGAACTTCTCAGTATCATCCAATGATTCAAAGAGgtaaaggttt ... ttctttttagGTTGCTTCAGGAGTTCGTCAACAAACATGGGGCTGATCTTAAAGTGATTTA
EST: TACAAATGGCTCAGCAGGAACTTCTCAGTATCATCCAATGATTCAAAGAG GTTGCTTCAGGAGTTCGTCAACAAACATGGGGCTGATCTTAAAGTGATTTAEST: gi|58687559|gb|CK076246.1|CK076246
genomic: TACAAATGGCTCAGCAGGAACTTCTCAGTATCATCCAATGATTCAAAGAGgtaaaggttt ... ttctttttagGTTGCTTCAGGAGTTCGTCAACAAACATGGGGCTGATCTTAAAGTGATTTA
EST: TACAAATGGCTCAGCAGGAACTTCTCAGTATCATCCAATGATTCAAAGAG GTTGCTTCAGGAGTTCGTCAACAAACATGGGGCTGATCTTAAAGTGATTTAEST: gi|88725034|gb|CI748293.1|CI748293
genomic: TACAAATGGCTCAGCAGGAACTTCTCAGTATCATCCAATGATTCAAAGAGgtaaaggttt ... ttctttttagGTTGCTTCAGGAGTTCGTCAACAAACATGGGGCTGATCTTAAAGTGATTTA
EST: TACAAATGGCTCAGCAGGAACTTCTCAGTATCATCCAATGATTCAAAGAG GTTGCTTCAGGAGTTCGTCAACAAACATGGGGCTGATCTTAAAGTGATTTAEST: gi|66917469|gb|CX104317.1|CX104317
genomic: TACAAATGGCTCAGCAGGAACTTCTCAGTATCATCCAATGATTCAAAGAGgtaaaggttt ... ttctttttagGTTGCTTCAGGAGTTCGTCAACAAACATGGGGCTGATCTTAAAGTGATTTA
EST: CTCAGTATCATCCAATGATTCAAAGAG GTTGCTTCAGGAGTTCGTCAACAAACATGGGGCTGATCTTAAAGTGATTTAEST: gi|88724862|gb|CI748121.1|CI748121
genomic: CTCAGTATCATCCAATGATTCAAAGAGgtaaaggttt ... ttctttttagGTTGCTTCAGGAGTTCGTCAACAAACATGGGGCTGATCTTAAAGTGATTTA
EST: TACAAATGGCTCAGCAGGAACTTCTCAGTATCATCCAATGATTCAAAGAG GTTGCTTCAGGAGTTCGTCAACAAACATGGGGCTGATCTTAAAGTGATTTA
genomic: TACAAATGGCTCAGCAGGAACTTCTCAGTATCATCCAATGATTCAAAGAGgtaaaggttt ... ttctttttagGTTGCTTCAGGAGTTCGTCAACAAACATGGGGCTGATCTTAAAGTGATTTA
cattggataaatgaaacatcctaaccacaactaactagttactaattctttttagGTTGCTTCAGGAGTTCGTCAACAAACATGGGGCTGATCTTAAAGTGATTTACAGTGTGTCTGGATGGTTAAAGAAGAACCCCACAAATTATTGTGTAAAA
tactaat putative branch site (score: 3)
ttcttttt CT-rich tract
ttactaattcttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaggtttcccttttatggatatttcccttaatcattggataaatgaaacatcctaaccacaactaactagttactaattctttttagGTTGCTTCAGGAGTTCGTCAACAAACATGGGGCTGATCTTAAAGTGATTTACAGTGTGTCTGGATGGTTAAAGAAGAACCCCACAAATTATTGTGTAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC