1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...taatccctcaaatgtgcccccttgtacttatctggcaaattagctgagtaaaatctcttgtagattatatttctgaatcaaattattcaatgttctgcagATCGTGAAAGAGGAAAACTGGGAAACATGCATTGCTGATTCACTGCTCTATGCTAAG
species | Oryza sativa |
transcript | LOC_Os01g10340.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGATCCAGGCGGTGCTCACGTTCCTCGTGCTCTTCGTCGTGAAG ATCGTGAAAGAGGAAAACTGGGAAACATGCATTGCTGATTCACTGCTCTATEST: gi|88329003|gb|CI658653.1|CI658653
genomic: GAGATCCAGGCGGTGCTCACGTTCCTCGTGCTCTTCGTCGTGAAGgtacgatcgt ... tgttctgcagATCGTGAAAGAGGAAAACTGGGAAACATGCATTGCTGATTCACTGCTCTAT
EST: GAGATCCAGGCGGTGCTCACGTTCCTCGTGCTCTTCGTCGTGAAG ATCGTGAAAGAGGAAAACTGGGAAACATGCATTGCTGATTCACTGCTCTATEST: gi|88342680|gb|CI657174.1|CI657174
genomic: GAGATCCAGGCGGTGCTCACGTTCCTCGTGCTCTTCGTCGTGAAGgtacgatcgt ... tgttctgcagATCGTGAAAGAGGAAAACTGGGAAACATGCATTGCTGATTCACTGCTCTAT
EST: GAGATCCAGGCGGTGCTCACGTTCCTCGTGCTCTTCGTCGTGAAG ATCGTGAAAGAGGAAAACTGGGAAACATGCATTGCTGATTCACTGCTCTATEST: gi|88401880|gb|CI591207.1|CI591207
genomic: GAGATCCAGGCGGTGCTCACGTTCCTCGTGCTCTTCGTCGTGAAGgtacgatcgt ... tgttctgcagATCGTGAAAGAGGAAAACTGGGAAACATGCATTGCTGATTCACTGCTCTAT
EST: GAGATCCAGGCGGTGCTCACGTTCCTCGTGCTCTTCGTCGTGAAG ATCGTGAAAGAGGAAAACTGGGAAACATGCATTGCTGATTCACTGCTCTATEST: gi|88308193|gb|CI648020.1|CI648020
genomic: GAGATCCAGGCGGTGCTCACGTTCCTCGTGCTCTTCGTCGTGAAGgtacgatcgt ... tgttctgcagATCGTGAAAGAGGAAAACTGGGAAACATGCATTGCTGATTCACTGCTCTAT
EST: GAGATCCAGGCGGTGCTCACGTTCCTCGTGCTCTTCGTCGTGAAG ATCGTGAAAGAGGAAAACTGGGAAACATGCATTGCTGATTCACTGCTCTATEST: gi|88693166|gb|CI736741.1|CI736741
genomic: GAGATCCAGGCGGTGCTCACGTTCCTCGTGCTCTTCGTCGTGAAGgtacgatcgt ... tgttctgcagATCGTGAAAGAGGAAAACTGGGAAACATGCATTGCTGATTCACTGCTCTAT
EST: GAGATCCAGGCGGTGCTCACGTTCCTCGTGCTCTTCGTCGTGAAG ATCGTGAAAGAGGAAAACTGGGAAACATGCATTGCTGATTCACTGCTCTATEST: gi|86847549|gb|CI287094.1|CI287094
genomic: GAGATCCAGGCGGTGCTCACGTTCCTCGTGCTCTTCGTCGTGAAGgtacgatcgt ... tgttctgcagATCGTGAAAGAGGAAAACTGGGAAACATGCATTGCTGATTCACTGCTCTAT
EST: GAGATCCAGGCGGTGCTCACGTTCCTCGTGCTCTTCGTCGTGAAG ATCGTGAAAGAGGAAAACTGGGAAACATGCATTGCTGATTCACTGCTCTAT
genomic: GAGATCCAGGCGGTGCTCACGTTCCTCGTGCTCTTCGTCGTGAAGgtacgatcgt ... tgttctgcagATCGTGAAAGAGGAAAACTGGGAAACATGCATTGCTGATTCACTGCTCTAT
gagtaaaatctcttgtagattatatttctgaatcaaattattcaatgttctgcagATCGTGAAAGAGGAAAACTGGGAAACATGCATTGCTGATTCACTGCTCTATGCTAAG
attatatttctgaatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatccctcaaatgtgcccccttgtacttatctggcaaattagctgagtaaaatctcttgtagattatatttctgaatcaaattattcaatgttctgcagATCGTGAAAGAGGAAAACTGGGAAACATGCATTGCTGATTCACTGCTCTATGCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - aatgtgc
- - - - - - - - - - - - - - - - - - - -ttagctg
- - - - - - - - - - - - - - - - - - - - - - - agtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaatc