Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtattaactataagatgttctgatttaccccttttctgttttttctatgtttgttattcttatctattttatttttctagCCTCTTCTTATTCAACTCCGCCTGTTCTACAATGGATCTGCTGTAAAGGGAACAGTCCTAGTTGACAAGCGG

Basic information

species Oryza sativa
transcript LOC_Os01g10140.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g10140.2 (Oryza sativa), 3'ss of exon 2
lower sequence: AC217553.3_FGT008 (Zea mays), 3'ss of exon 6
---------------------gtattgtattaactataagatgttctgatttaccccttttctgttttttctatgtttgttattcttatctattttatttttctagCCTCTTCTTATTCAACTCCGCCTGTTCTACAATGGATCTGCTGTAAAGGGAACAGTCCTAGTTGACAAGCGG
                     | ||  |  | |  ||   || || |   |||       | || || |||| ||||| ||||   | ||| || | ||| ||||||||||||| || ||  |||| || || || ||||||| |||||||||||||||  | |||||||||||  ||
gtgagttccaagttcaaagtggcatcattctcaacattgaat-ttgtatattattatgcatgtgcttattctctgttt-ttatatct-tctgttct-tttctctagcctcttctcatgcagGTCCGTCTTTTTTATAATGGATATGCTGTAAAGGGAACTCTGCTAGTTGACAAAAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86904952|gb|CI310745.1|CI310745
EST:     TGGATTGTGCTGCAAGCAAATTGATGGGGTCTAACAACACCACTGAATAT                         CCTCTTCTTATTCAACTCCGCCTGTTCTACAATGGATCTGCTGTAAAGGGA
genomic: TGGATTGTGCTGCAAGCAAATTGATGGGGTCTAACAACACCACTGAATATgtattgtatt ... atttttctagCCTCTTCTTATTCAACTCCGCCTGTTCTACAATGGATCTGCTGTAAAGGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taccccttttctgttttttctatgtttgttattcttatctattttatttttctagCCTCTTCTTATTCAACTCCGCCTGTTCTACAATGGATCTGCTGTAAAGGGAACAGTCCTAGTTGACAAGCGG
                               ttcttatctattttat  CT-rich tract
             ttttttctatgtttgt  TA-rich tract