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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctaattatttggagttggaagcaattgtcaaactagtgagcagagtggttctgaggactttccttttgatgtttaatttattatctgctaatttttacagGTTCTTGCCATTGTTCAAGAAACATGGTTGGATCCAGCTCTTGGTCTCACACCTTATGATGTGCACAAGCATGTTGGATTTCTCAAACATCTTATGATAA

Basic information

species Oryza sativa
transcript LOC_Os01g09750.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g09750.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G115198_T01 (Zea mays), 3'ss of exon 2
ctaattatttggagttggaagcaattgtcaaactagtgagcagagtggttctgag--gactttccttttg--atgtttaatttattatctgctaatttttacagGTTCTTGCCATTGTTCAAGAAACATGGTTGGATCCAGCTCTTGGTCTCACACCTTATGATGTGCACAAGCATGTTGGATTTCTCAAACATCTTATGATAA
    ||||||  | |||        ||    | |||   | ||  |  || |  |  || |  |  | ||  ||| | |||| |||| |||||||| | || ||||||||||  ||||||||||||| ||| ||||||| ||  | || ||||||||||||||||| || ||||||||||| |||||||| ||||| |||||||
--tgttattt--aattgttgattggtgggtgaatagcacgtagcttttttattggtcgattaacaatatgggatgctgaattaattagctgctaatgtctatagGTTCTTGCAGTTGTTCAAGAAACCTGGATGGATCCTGCCATAGGCCTCACACCTTATGATGTCCATAAGCATGTTGGGTTTCTCAAGCATCTGATGATAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttctgaggactttccttttgatgtttaatttattatctgctaatttttacagGTTCTTGCCATTGTTCAAGAAACATGGTTGGATCCAGCTCTTGGTCTCACACCTTATGATGTGCACAAGCATGTTGGATTTCTCAAACATCTTATGATAA
                                        tgctaat  putative branch site (score: 2)
                                              tttttac  CT-rich tract
                  ttttgatgtttaattt  TA-rich tract