1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...taatagataagagaatccagccttagattctaactttgtgatcatgtatggcttctgcttgtgcccgtgatgctattgtttcatatctgtttcccaatagTCGATAAACAGGAAACAATGGAAGAGACCATTCTCACTGGTGATGATCTCATGCGTGAGCCACCATCCCCTGCCATACCAAAAGAAATTGCCTCGCATGT
species | Oryza sativa |
transcript | LOC_Os01g09500.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGCGTCGGATTGCTCGCCGGCGTGAAAGCTTACTAGGGCATCATGGACG TCGATNAACAGGAAACAATGGAAGAGACCATTCTCATTGGTGATGATCTCA
genomic: CCGCGTCGGATTGCTCGCCGGCGTGAAAGCTTACTAGGGCATCATGGACGgtatgcacgc ... ttcccaatagTCGATAAACAGGAAACAATGGAAGAGACCATTCTCACTGGTGATGATCTCA
gtatggcttctgcttgtgcccgtgatgctattgtttcatatctgtttcccaatagTCGATAAACAGGAAACAATGGAAGAGACCATTCTCACTGGTGATGATCTCATGCGTGAGCCACCATCCCCTGCCATACCAAAAGAAATTGCCTCGCATGT
tctgtttccc CT-rich tract
tattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatagataagagaatccagccttagattctaactttgtgatcatgtatggcttctgcttgtgcccgtgatgctattgtttcatatctgtttcccaatagTCGATAAACAGGAAACAATGGAAGAGACCATTCTCACTGGTGATGATCTCATGCGTGAGCCACCATCCCCTGCCATACCAAAAGAAATTGCCTCGCATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - aagagaat
- - - - - - - - ccagcct
- - - - - - - - - - - - - - - - - -ttgtgat
- - - - - - - - - - - - - - - - - - - - - -atgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttca