1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgtttattcgcaatagcaactaaaattgttcttgattattaccaactagaaaatttgtcgtttttgtgtgctaaggtacataagtctatacttgttcctacagATCGGCATCTTTTGTTTGCCTCCAAGGGGTGTCATTCCTCTCCATAATCACCCCAACATGACTGTGTTCAGTAAGCTTCTTTTTGGTGAGCTGCGTGTGA
species | Oryza sativa |
transcript | LOC_Os01g09030.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCATTCCTAAAATCACTTACTTACACCTTTATGAGTGTGAGGCTTTCTCG ATCGGCATCTTTTGTTTGCCTCCAAGGGGTGTCATTCCTCTCCATAATCGGEST: gi|27578223|gb|CB000918.1|CB000918
genomic: GCATTCCTAAAATCACTTACTTACACCTTTATGAGTGTGAGGCTTTCTCGgtatgtttat ... gttcctacagATCGGCATCTTTTGTTTGCCTCCAAGGGGTGTCATTCCTCTCCATAATCAC
EST: GCATTCCTAAAATCACTTACTTACACCTTTATGAGTGTGAGGCTTTCTCG ATCGGCATCTTTTGTTTGCCTCCAAGGGGTGTCATTCCTCTCCATAAATCAEST: gi|9494076|gb|D24451.2|D24451
genomic: GCATTCCTAAAATCACTTACTTACACCTTTATGAGTGTGAGGCTTTCTCGgtatgtttat ... gttcctacagATCGGCATCTTTTGTTTGCCTCCAAGGGGTGTCATTCCTCTCCATAA-TCA
EST: GTGAGGCTTTCTCG ATCGGCATCTTTTGTTTGCCTCCAAGGGGTGTCATTCCTCTCCATAATCAC
genomic: GTGAGGCTTTCTCGgtatgtttat ... gttcctacagATCGGCATCTTTTGTTTGCCTCCAAGGGGTGTCATTCCTCTCCATAATCAC
gaaaatttgtcgtttttgtgtgctaaggtacataagtctatacttgttcctacagATCGGCATCTTTTGTTTGCCTCCAAGGGGTGTCATTCCTCTCCATAATCACCCCAACATGACTGTGTTCAGTAAGCTTCTTTTTGGTGAGCTGCGTGTGA
cttgttcct CT-rich tract
tttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttattcgcaatagcaactaaaattgttcttgattattaccaactagaaaatttgtcgtttttgtgtgctaaggtacataagtctatacttgttcctacagATCGGCATCTTTTGTTTGCCTCCAAGGGGTGTCATTCCTCTCCATAATCACCCCAACATGACTGTGTTCAGTAAGCTTCTTTTTGGTGAGCTGCGTGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC