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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtagcttataagaagatttggactttggtggcataaatggatgaactaactggcggcttcaacgtggtgttgattacagGTGCTTTTATTGCTAACTGGAGCAGTTTGTGTAGTTTCTTTCTTTCTCTTTGAGAATTCTCTCAGTTTCTTGGGCAGGCTCTTGAGCTACCAAGTATGTC

Basic information

species Oryza sativa
transcript LOC_Os01g08700.5
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g08700.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G107101_T05 (Zea mays), 3'ss of exon 2
gcaagtagcttataagaagatttggactttggtggcataaatggatgaactaactggcggcttcaacgtggtgttgattacagGTGCTTTTATTGCTAACTGGAGCAGTTTGTGTAGTTTCTTTCTTTCTCTTTGAGAATTCTCTCAGTTTCTTGGGCAGGCTCTTGAGCTACCAAGTATGTC-----------------------------------------------------------------------------
                                                                                   ||||| |||||| | | |||| |  | |||||| ||| |||||||| ||||||||    |   ||||||||||||||||||||||||||||||| |||||                                                                             
-----------------------------------------------------------------------------------gtgctcttattggttattggatcgctgtgtgtaatttgtttctttccctttgagagcctttctagtttcttgggcagGCTCTTGAGCTACCAAGCATGTCAGATTCAAATGTGAAGTGGATTGATGGGCTCCAGTTCACATCATTGTACTGGCCTCCACCCCTCGATGCGGAGCAGA

upper sequence: LOC_Os01g08700.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM5G844173_T01 (Zea mays), 3'ss of exon 1
gcaagtagcttataagaagatttggactttggtggcataaatggatgaactaactggcggcttcaacgtggtgttgattacagGTGCTTTTATTGCTAACTGGAGCAGTTTGTGTAGTTTCTTTCTTTCTCTTTGAGAATTCTCTCAGTTTCTTGGGCAGGCTCTTGAGCTACCAAGTATGTC-----------------------------------------------------------------------------
                                                            ||| |||   |||||||||||||||||| |||||| | |  ||| || |  ||| | ||| ||||||||  |||||||    |   ||||||||||||||||||||||||||||||| |||||                                                                             
----------------------------------------------------------aacttgaacacagtgttgattacaggtgctcttattggttatgggatcaat--gtgcaatttttttctttccgtttgagagcctttctagtttcttgggcagGCTCTTGAGCTACCAAGCATGTCAGAATCAAATGTGAAGTGGATTGATGGGCTTCACTTCACATCATTGTACTGGCCTCCACCCCAGGATGTGGAGCAGA

upper sequence: LOC_Os01g08700.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G107101_T06 (Zea mays), 3'ss of exon 1
gcaagtagcttataagaagatttggactttggtggcataaatggatgaactaactggcggcttcaacgtggtgttgattacagGTGCTTTTATTGCTAACTGGAGCAGTTTGTGTAGTTTCTTTCTTTCTCTTTGAGAATTCTCTCAGTTTCTTGGGCAGGCTCTTGAGCTACCAAGTATGTC------------------------------------------------------
                                                                                   ||||| |||||| | | |||| |  | |||||| ||| |||||||| ||||||||    |   ||||||||||||||||||||||||||||||| |||||                                                      
-----------------------------------------------------------------------------------gtgctcttattggttattggatcgctgtgtgtaatttgtttctttccctttgagAGCCTTTCTAGTTTCTTGGGCAGGCTCTTGAGCTACCAAGCATGTCAGATTCAAATGTGAAGTGGATTGATGGGCTCCAGTTCACATCATTGTACTGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtggcataaatggatgaactaactggcggcttcaacgtggtgttgattacagGTGCTTTTATTGCTAACTGGAGCAGTTTGTGTAGTTTCTTTCTTTCTCTTTGAGAATTCTCTCAGTTTCTTGGGCAGGCTCTTGAGCTACCAAGTATGTC
        ataaat  TA-rich tract