Sequence
atgc intronic sequence ATGC exonic sequencegtgcttttattgctaactggagcagtttgtgtagtttctttctttctctttgagaattctctcagTTTCTTGGGCAGGCTCTTGAGCTACCAAGTATGTCAGCTTCAAATGAGAAGTGGATTGATGGGCTCCAGTTCTCATCACTGTTCTGGCCCCCACCACAGG
Basic information
species | Oryza sativa |
transcript | LOC_Os01g08700.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g08700.4 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G107101_T05 (Zea mays), 3'ss of exon 2
gtgcttttattgctaactggagcagtttgtgtagtttctttctttctctttgagaattctctcagTTTCTTGGGCAGGCTCTTGAGCTACCAAGTATGTCAGCTTCAAATGAGAAGTGGATTGATGGGCTCCAGTTCTCATCACTGTTCTGGCCCCCACCACAGG------------
||||| |||||| | | |||| | | |||||| ||| |||||||| |||||||| | ||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||| ||| |||||| ||||| | |
gtgctcttattggttattggatcgctgtgtgtaatttgtttctttccctttgagagcctttctagtttcttgggcagGCTCTTGAGCTACCAAGCATGTCAGATTCAAATGTGAAGTGGATTGATGGGCTCCAGTTCACATCATTGTACTGGCCTCCACCCCTCGATGCGGAGCAGA
upper sequence: LOC_Os01g08700.4 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM5G844173_T01 (Zea mays), 3'ss of exon 1
-------------------------gtgcttttattgctaactggagcagtttgtgtagtttctttctttctctttgagaattctctcagTTTCTTGGGCAGGCTCTTGAGCTACCAAGTATGTCAGCTTCAAATGAGAAGTGGATTGATGGGCTCCAGTTCTCATCACTGTTCTGGCCCCCACCACAGG------------
||||| |||||| | | ||| || |||| | ||| |||||||| ||||||| | ||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||| || ||| ||||| ||| |||||| ||||| ||||
aacttgaacacagtgttgattacaggtgctcttattggttatgggatcaa--tgtgcaatttttttctttccgtttgagagcctttctagtttcttgggcagGCTCTTGAGCTACCAAGCATGTCAGAATCAAATGTGAAGTGGATTGATGGGCTTCACTTCACATCATTGTACTGGCCTCCACCCCAGGATGTGGAGCAGA
upper sequence: LOC_Os01g08700.4 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G107101_T06 (Zea mays), 3'ss of exon 1
gtgcttttattgctaactggagcagtttgtgtagtttctttctttctctttgagaattctctcagTTTCTTGGGCAGGCTCTTGAGCTACCAAGTATGTCAGCTTCAAATGAGAAGTGGATTGATGGGCTCCAGTTCTCATCACTGTTCTGGCCCCCACCACAGG
||||| |||||| | | |||| | | |||||| ||| |||||||| |||||||| | ||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||| ||| ||||||
gtgctcttattggttattggatcgctgtgtgtaatttgtttctttccctttgagAGCCTTTCTAGTTTCTTGGGCAGGCTCTTGAGCTACCAAGCATGTCAGATTCAAATGTGAAGTGGATTGATGGGCTCCAGTTCACATCATTGTACTGGCC-----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29667208|gb|CB663483.1|CB663483EST: GGCATAAATGGATGAACTAACTGGCGGCTTCAACGTGGTGTTGATT--A- ---------CAGGCTCTTGAGCTACCAAGTATGTCAGCTTCAAATGAGAAG
genomic: GGCATAAATGGATGAACTAACTGGCGGCTTCAACGTGGTGTTGATTACAGgtgcttttat ... attctctcagTTTCTTGGGCAGGCTCTTGAGCTACCAAGTATGTCAGCTTCAAATGAGAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgctaactggagcagtttgtgtagtttctttctttctctttgagaattctctcagTTTCTTGGGCAGGCTCTTGAGCTACCAAGTATGTCAGCTTCAAATGAGAAGTGGATTGATGGGCTCCAGTTCTCATCACTGTTCTGGCCCCCACCACAGG
tgctaac putative branch site (score: 1)
ttctctc putative PPT
tttcttt TA-rich tract