Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggttctaaagtgtgtgacaatactaggtaacgtaaaaagttagtacataaatagacgtgtttcctgtccaaattactcaacttcggtctgtgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACGTGGCATTATGTATGAAGCTCTTTGAGCACAAACCTTTTGATGCAAGGAC

Basic information

species Oryza sativa
transcript LOC_Os01g07310.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g07310.4 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G081848_T05 (Zea mays), 3'ss of exon 2
----ggttctaaagtgtgtgacaatactaggtaacgtaaaaagttagtacataaatagacgtgtttcctgtccaaattactcaacttcggtctgtgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACGTGGCATTATGTATGAAGCTCTTTGAGCACAAACCTTTTGATGCAAGGAC
     || || |||||   | |  | |||   |||  | ||  |||| | | ||   |  |  ||||||    |   || | || |   || |   |||||||||||| |||||||||||||||||||| || || || || |||||||| || || |||||||||||||| |||||||||||||||||||| |||||||||||
cacgtgtcctcaagtgacagtccgt-ctata-aacagataatattagcaaagaag--gcaggttttcctccatatgctaataaaatctcgtattcattttgcagCCACCACTTTGACAAGCTGGCATCTTCTGGTCACCTTCTGCTCTCTCCATGTAGCATTATGTATGAAACTCTTTGAGCACAAACCTTTCGATGCAAGGAC

upper sequence: LOC_Os01g07310.4 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G116053_T01 (Zea mays), 3'ss of exon 2
-ggttctaaagtgtgtgacaatactaggtaacgtaaaaagttagtacataaatagacgtgtttcctgtccaaattactcaacttcggtctgtgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACGTGGCATTATGTATGAAGCTCTTTGAGCACAAACCTTTTGATGCAAGGAC
    | |   | | |||||| | |      |   | | | | |   || | |  |  |  ||||||       ||| | || |  ||| |   |||||||||||||||||||||||||||||||||||| |||||||| || ||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||||
caagtgtggtgag-gtgacagtgcgtctataaacagataatgatagcaaagaaggcaggttttcctccaagtgttaataaaatgtggtattcattttgcagCCACTACTTTGACAAGCTGGCATCTCCTGGTTACATTCTGTTCTCTCCATGTGGCATTATGTATGAAGCTGTTTGAGCACAAACCTTTCGATGCAAGGAC

upper sequence: LOC_Os01g07310.4 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA06G14980.1 (Glycine max), 3'ss of exon 2
--ggttctaaagtgtgtgacaatactaggtaacgtaaaaagttagtacataaatagacgtgtttcctgtccaaattactcaacttcggtctgtgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACGTGGCATTATGTATGAAGCTCTTTGAGCACAAACCTTTTGATGCAAGGAC
    || |       ||  |   |    | | | |||    || | |    |||   |  |  |   |     | ||   | | | |   |      |||||| || ||||||||||| |||||||| || || |||||||| || ||||| |||||| ||    |||  || ||||||||||||||||||||    |   |
taacttttgttagaagtagctccatgctgcatcctaacccatttgaagtataatgtcctagagttgaggttttaatatgtatccttgaattcc--catgcagCTACAACTTTGACAAGTTGGCATCTTCTTGTAACATTTTGTTCCCTTCATGTGGCACTAAAGTTGAGACTTTTTGAGCACAAACCTTTTGAGCAGAAAGC

upper sequence: LOC_Os01g07310.4 (Oryza sativa), 3'ss of exon 2
lower sequence: AT2G30460.1 (Arabidopsis thaliana), 3'ss of exon 3
ggttctaaagtgtgtgacaatactaggtaacgtaaaaagtta-gtacataaatagacgtgtttcctgtcca-aattactca--acttcggtctgtgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACGTGGCATTATGTATGAAGCTCTTTGAGCACAAACCTTTTGATGCAAGGAC
   |||  |   || |  ||  | |   |   ||| |  ||| | |   ||    |     |  ||||    ||| | | |  ||||     ||   ||  |||| |||||||||||||||||||||||  | || |||||||| || ||||| ||||||||||| |||||| | ||||||||||| ||||||||| || |  |
---tctttaccatgggtgaactccattcatgataacagtttatgcatggaatctcatagtctatctgtgtgtaatcatttattactttatattgaactt-acagCAACTACTTTGACAAGCTGGCATCTTTTGGTGACATTTTGTTCACTTCATGTGGCATTATGGATGAAGTTTTTTGAGCACAAGCCTTTTGATCCACGAGC

upper sequence: LOC_Os01g07310.4 (Oryza sativa), 3'ss of exon 2
lower sequence: AT1G06890.2 (Arabidopsis thaliana), 3'ss of exon 2
ggttctaaagtgtgtg--acaatactaggtaacgtaaaaagttagtacataaatagacgtgtttcctgtccaaattactcaacttcggtctgtgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACGTGGCATTATGTATGAAGCTCTTTGAGCACAAACCTTTTGATGCAAGGAC
  || | | || ||||   | |||  || |    |   |  ||| | ||    |   |   |   || ||     |        |   | ||| | |  |||| |||||||||||||| ||||||||  | || |||||||| || ||||| ||||||||||| |||||| | || || ||||| ||||||||| || |  |
cattttgatgtctgtgttgccataacagcttttatgtcatctta-tgcaattttgatctcataagctatctgttcttactcttgttattttgtatgt-acagCGACTACTTTGACAAGTTGGCATCTTTTGGTCACATTTTGTTCCCTTCATGTGGCATTATGGATGAAGATGTTCGAACACAAGCCTTTTGATCCACGAGC

upper sequence: LOC_Os01g07310.4 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv06s0004g07960.t01 (Vitis vinifera), 3'ss of exon 3
ggttctaaagtgtgtgacaatactaggtaacgtaaaaagttag-tacataaatagacgtgtttcctgtccaaattactcaact-tcggtctgtgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACGTGGCATTATGTATGAAGCTCTTTGAGCACAAACCTTTTGATGCAAGGAC
 ||   ||  | |    || |  ||  |    |        || | | |   ||     || |   || |  |||  | ||||  |   ||||   |||||||||| ||||| || ||||||||||| || || |||||||| |||||||| |||||| |||| |||||  | ||||||||||| |||||||| || ||  |
agtgaaaacttttcctccattcatatatttgctcttttcacagctgctttgttaatttagtcttgagttctcatt--ttaactacccaactgtcgattgcagCCACAACTTTAACTAGCTGGCATCTTCTGGTCACATTTTGTTCTCTTCATGTGGCACTATGGATGAAATTATTTGAGCACAAGCCTTTTGACGCTAGAGC

upper sequence: LOC_Os01g07310.4 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv13s0067g02970.t01 (Vitis vinifera), 3'ss of exon 3
ggttctaaagtgtgtgacaatactaggtaacgtaaaaagttagtacataaatagacgtgtttcctgtccaaattactcaacttcggtctgtgttt-tgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACGTGGCATTATGTATGAAGCTCTTTGAGCACAAACCTTTTGATGCAAGGAC
| |  ||    ||   | |  ||||  ||   | |     || |     || |   |  | | ||      |||| ||  ||    || || ||| | |||| ||||| ||||||||||||||||| || || || || || |||||||| |||||  |||| |||||  | ||||| |||||||| ||||||||||   |
gctattaggcggtaacaaagcactaactataatgattgtatactttgataagatttgcttctacttgtggcatta-tcttctgtcatccgtctttgtacagCTACTACATTGACAAGCTGGCATCTTCTGGTCACTTTCTGTTCTCTTCATGTGGCTCTATGGATGAAATTGTTTGAACACAAACCATTTGATGCAAAAGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58657497|gb|CK046177.1|CK046177
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|58689272|gb|CK077959.1|CK077959
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|33679023|gb|CF307262.1|CF307262
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|88404615|gb|CI581051.1|CI581051
EST:     CATGGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGTTTCCACTTCG                         CCACTACTTTGACAAGCTGGGATCTCCT-GTTA
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTA
EST: gi|33679263|gb|CF307502.1|CF307502
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|29646078|gb|CB651085.1|CB651085
EST:     CATTGTCATCTGCAACAAGGGCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGGTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|88404240|gb|CI575728.1|CI575728
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCAGG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|58588563|gb|CF986871.1|CF986871
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|218500395|gb|FG958811.1|FG958811
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|88389475|gb|CI600644.1|CI600644
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         ACACTACTTTGACAAGCTGGCATCTCCTC
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTC
EST: gi|58693672|gb|CK082359.1|CK082359
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|88407697|gb|CI607831.1|CI607831
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTG
EST: gi|58691484|gb|CK080171.1|CK080171
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|58657641|gb|CK046321.1|CK046321
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|218479998|gb|FG959805.1|FG959805
EST:     CATTGTCATCTGCAAC-AGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|88425263|gb|CI564780.1|CI564780
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|8857939|gb|AU095257.1|AU095257
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGGACAAGCTGGGCATCTCCTCGTTACATTTTGCTCTCTTCA
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTG-ACAAGCTGG-CATCTCCTCGTTACATTTTGCTCTCTTCA
EST: gi|88362325|gb|CI608716.1|CI608716
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGGTCTCTTCAGG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|88423736|gb|CI617088.1|CI617088
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAG
EST: gi|88423801|gb|CI609832.1|CI609832
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|58665638|gb|CK054324.1|CK054324
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|58686479|gb|CK075166.1|CK075166
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|29663298|gb|CB659573.1|CB659573
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|29645083|gb|CB650090.1|CB650090
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|3061098|gb|C91730.1|C91730
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         C-ACTACTTTGACAAGCTGGCATCTCCTCGT
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGT
EST: gi|88406984|gb|CI578512.1|CI578512
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCATTACTTTGACAAGCT
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCT
EST: gi|29641313|gb|CB646320.1|CB646320
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|88426166|gb|CI574049.1|CI574049
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTC
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTC
EST: gi|58606825|gb|CK034858.1|CK034858
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|88312159|gb|CI582497.1|CI582497
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCA
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCA
EST: gi|29645955|gb|CB650962.1|CB650962
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|86876961|gb|CI309749.1|CI309749
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|86850723|gb|CI309535.1|CI309535
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|44678003|gb|CR291437.1|CR291437
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|88401466|gb|CI586022.1|CI586022
EST:     -ATTGTCATCTGCAACAAGGCCCTCATGAGCTCC-TCGGCTTCAACTTCG                         CCACTACTTTGATAAGCTGGCATCT
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCT
EST: gi|58687536|gb|CK076223.1|CK076223
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|88735366|gb|CI758874.1|CI758874
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTAATTTGACAAGCTGGGATTTCCTCGTTACA
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACA
EST: gi|33796589|gb|CF324162.1|CF324162
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|29681211|gb|CB677486.1|CB677486
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|58586232|gb|CF984540.1|CF984540
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|58593927|gb|CF992235.1|CF992235
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|702015|gb|D48306.1|D48306
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACAATTTTGCTCTCTTCAC
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACA-TTTTGCTCTCTTCAC
EST: gi|58656550|gb|CK045230.1|CK045230
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 70 (downstream exon)
Score: 43

CAGCTGGGGACGGTGGGGGCGCTCAGCCTCTCGGTGGTGTCCTCGGTCTCCATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACGTGGCATTATGTATGAAGCTCTTTGAGCACAAACCTTTTGATGCAAGGAC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cataaatagacgtgtttcctgtccaaattactcaacttcggtctgtgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACGTGGCATTATGTATGAAGCTCTTTGAGCACAAACCTTTTGATGCAAGGAC
                        aaattact  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggttctaaagtgtgtgacaatactaggtaacgtaaaaagttagtacataaatagacgtgtttcctgtccaaattactcaacttcggtctgtgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACGTGGCATTATGTATGAAGCTCTTTGAGCACAAACCTTTTGATGCAAGGAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC