1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagtgtggttctttgctcgggatttctttgggatattgatggtttcgagttcttgggtttttacggcgatgcctttgcgtgcgctgtatgtatacagGTCGGGGAGGAGGAGGAGACAAGGTGGTGCACGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAG
species | Oryza sativa |
transcript | LOC_Os01g05510.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGCGTGGCTGTGCACAAGCGGCGGCGTGGCTTGGCCGTGGAGAACGCCA GTCGGGGAGGAGGAGGAGACAAGGTGGTGCGCGAAGGCTCTTCTGAGCAAGEST: gi|58596595|gb|CK007123.1|CK007123
genomic: TGGCGTGGCTGTGCACAAGCGGCGGCGTGGCTTGGCCGTGGAGAACGCCAgtgagtgtgg ... atgtatacagGTCGGGGAGGAGGAGGAGACAAGGTGGTGCACGAAGGCTCTTCTGAGCAAG
EST: TGGCGTGGCTGTGCACAAGCGGCGGCGTGGCTTGGCCGTGGAGAACGCCA GTCGGGGAGGAGGAGGAGACAAGGTGGTGCACGAAGGCTCTTCTGAGCAAGEST: gi|88400319|gb|CI591009.1|CI591009
genomic: TGGCGTGGCTGTGCACAAGCGGCGGCGTGGCTTGGCCGTGGAGAACGCCAgtgagtgtgg ... atgtatacagGTCGGGGAGGAGGAGGAGACAAGGTGGTGCACGAAGGCTCTTCTGAGCAAG
EST: TGGCGTGGCTGTGCACAAGCGGCGGCGTGGCTTGGCCGTGGAGAACGCCA GTCGGGGAGGAGGAGGAGACAAGGTGGTGCACGAAGGCTCTTCTGAGCAAGEST: gi|58689352|gb|CK078039.1|CK078039
genomic: TGGCGTGGCTGTGCACAAGCGGCGGCGTGGCTTGGCCGTGGAGAACGCCAgtgagtgtgg ... atgtatacagGTCGGGGAGGAGGAGGAGACAAGGTGGTGCACGAAGGCTCTTCTGAGCAAG
EST: TGGCGTGGCTGTGCACAAGCGGCGGCGTGGCTTGGCCGTGGAGAACGCCA GTCGGGGAGGAGGAGGAGACAAGGTGGTGCACGAAGGCTCTTCTGAGCAAGEST: gi|58667230|gb|CK055916.1|CK055916
genomic: TGGCGTGGCTGTGCACAAGCGGCGGCGTGGCTTGGCCGTGGAGAACGCCAgtgagtgtgg ... atgtatacagGTCGGGGAGGAGGAGGAGACAAGGTGGTGCACGAAGGCTCTTCTGAGCAAG
EST: TGGCGTGGCTGTGCACAAGCGGCGGCGTGGCTTGGCCGTGGAGAACGCCA GTCGGGGAGGAGGAGGAGACAAGGTGGTGCACGAAGGCTCTTCTGAGCAAGEST: gi|117246389|gb|CT843250.1|CT843250
genomic: TGGCGTGGCTGTGCACAAGCGGCGGCGTGGCTTGGCCGTGGAGAACGCCAgtgagtgtgg ... atgtatacagGTCGGGGAGGAGGAGGAGACAAGGTGGTGCACGAAGGCTCTTCTGAGCAAG
EST: TGGCGTGGCTGTGCACAAGCGGCGGCGTGGCTTGGCCGTGGAGAACGCCA GTCGGGGAGGAGGAGGAGACAAGGTGGTGCACGAAGGCTCTTCTGAGCAAG
genomic: TGGCGTGGCTGTGCACAAGCGGCGGCGTGGCTTGGCCGTGGAGAACGCCAgtgagtgtgg ... atgtatacagGTCGGGGAGGAGGAGGAGACAAGGTGGTGCACGAAGGCTCTTCTGAGCAAG
tttcgagttcttgggtttttacggcgatgcctttgcgtgcgctgtatgtatacagGTCGGGGAGGAGGAGGAGACAAGGTGGTGCACGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAG
tatgtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgtggttctttgctcgggatttctttgggatattgatggtttcgagttcttgggtttttacggcgatgcctttgcgtgcgctgtatgtatacagGTCGGGGAGGAGGAGGAGACAAGGTGGTGCACGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA