1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaaatttcttctccatcagcaaaagagcaatgataaatatatttagccgcgcatttgaacctcatgcctgcatttgctaaacttcactcttggcagGTTCACCATTGGATTCATATTGGTACTGAAAGGGTTCAATGCCAGCGAGCACTGTTCTTGGTGCCATTACCTGAGCTGTGTACCTACTTCAAAGTGGAGT
species | Oryza sativa |
transcript | LOC_Os01g05430.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACATACCAAATCATACTTTGGGTTATTGCTACATTAATATTGATTTCTGG GTTCACCATTGGATTCATATTGGTACTGAAAGGGTTCAATGCCAGCGAACAEST: gi|88490179|gb|CI427451.1|CI427451
genomic: ACATACCAAATCATACTTTGGGTTATTGCTACATTAATATTGATTTCTGGgtaaatttct ... ctcttggcagGTTCACCATTGGATTCATATTGGTACTGAAAGGGTTCAATGCCAGCGAGCA
EST: ACATACCAAATCATACTTTGGGTTATTGGTACATTAATATTGATTTCTGG GTTCACCATTGGATTCATATTGGTACTGAAAGGGTTCAATGCCAGCGAGCA
genomic: ACATACCAAATCATACTTTGGGTTATTGCTACATTAATATTGATTTCTGGgtaaatttct ... ctcttggcagGTTCACCATTGGATTCATATTGGTACTGAAAGGGTTCAATGCCAGCGAGCA
tttagccgcgcatttgaacctcatgcctgcatttgctaaacttcactcttggcagGTTCACCATTGGATTCATATTGGTACTGAAAGGGTTCAATGCCAGCGAGCACTGTTCTTGGTGCCATTACCTGAGCTGTGTACCTACTTCAAAGTGGAGT
tgctaaa putative branch site (score: 4)
cttcactctt CT-rich tract
atttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatttcttctccatcagcaaaagagcaatgataaatatatttagccgcgcatttgaacctcatgcctgcatttgctaaacttcactcttggcagGTTCACCATTGGATTCATATTGGTACTGAAAGGGTTCAATGCCAGCGAGCACTGTTCTTGGTGCCATTACCTGAGCTGTGTACCTACTTCAAAGTGGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG