1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagtaacaacatcttcctcgtcgattgccaagcttgttcgtctccattgatggtgagatataagcgagtgaagtgactgatgtttgcaatggtttgatcagCTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCGTGAACTACATGAAGACGCGGCTCGGGCAGGAGAGCGCCATTGCCGCCAA
species | Oryza sativa |
transcript | LOC_Os01g04950.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCG CTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCCTGAGCACCAACCTCGEST: gi|88358200|gb|CI605125.1|CI605125
genomic: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCGgtaagtaaca ... gtttgatcagCTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCG
EST: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCG CTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCGEST: gi|88314293|gb|CI602625.1|CI602625
genomic: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCGgtaagtaaca ... gtttgatcagCTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCG
EST: GGCCACCAAGAACAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCG CTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCGEST: gi|88762509|gb|CI772065.1|CI772065
genomic: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCGgtaagtaaca ... gtttgatcagCTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCG
EST: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCG CTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCGEST: gi|88414987|gb|CI601819.1|CI601819
genomic: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCGgtaagtaaca ... gtttgatcagCTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCG
EST: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCG TTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCGEST: gi|29646409|gb|CB651416.1|CB651416
genomic: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCGgtaagtaaca ... gtttgatcagCTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCG
EST: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCG CTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCGEST: gi|88745560|gb|CI768920.1|CI768920
genomic: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCGgtaagtaaca ... gtttgatcagCTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCG
EST: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCG CTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCGEST: gi|117229908|gb|CT846338.1|CT846338
genomic: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCGgtaagtaaca ... gtttgatcagCTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCG
EST: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCG CTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCGEST: gi|88363891|gb|CI607201.1|CI607201
genomic: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCGgtaagtaaca ... gtttgatcagCTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCG
EST: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCG CTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCGEST: gi|88726212|gb|CI749867.1|CI749867
genomic: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCGgtaagtaaca ... gtttgatcagCTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCG
EST: GGCCACCAACAACAACACCGGCAACTGGCGTGCCTGCCCCTANATCCTCG CTAACGAGTGCTGGGAGAGGCTGGCEST: gi|88316937|gb|CI625574.1|CI625574
genomic: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCGgtaagtaaca ... gtttgatcagCTAACGAGTGCTGCGAGAGGCTGGC
EST: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCG CTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCGEST: gi|88395178|gb|CI609494.1|CI609494
genomic: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCGgtaagtaaca ... gtttgatcagCTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCG
EST: GCCACCAAGAAGAACACCGGCCAACTGGCGTGCCTGCCCCTACATCCTCG CTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGACCACCAACCTCGEST: gi|88402788|gb|CI613236.1|CI613236
genomic: GCCACCAAGAAGAACACCGGC-AACTGGCGTGCCTGCCCCTACATCCTCGgtaagtaaca ... gtttgatcagCTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCG
EST: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCG CTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCGEST: gi|88370557|gb|CI590135.1|CI590135
genomic: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCGgtaagtaaca ... gtttgatcagCTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCG
EST: GGCCACCAAGAAGAACACCGGCAAGTGGCGTGCCTGCCCCTACATCCTCG CTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCGEST: gi|88739283|gb|CI762791.1|CI762791
genomic: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCGgtaagtaaca ... gtttgatcagCTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCG
EST: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCG CTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCGEST: gi|58609810|gb|CK037843.1|CK037843
genomic: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCGgtaagtaaca ... gtttgatcagCTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCG
EST: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTA-AGGCTCG CTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCGEST: gi|58664808|gb|CK053494.1|CK053494
genomic: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCGgtaagtaaca ... gtttgatcagCTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCG
EST: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCG CTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCGEST: gi|88736884|gb|CI760392.1|CI760392
genomic: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCGgtaagtaaca ... gtttgatcagCTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCG
EST: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCG CTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCGEST: gi|88723934|gb|CI745631.1|CI745631
genomic: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCGgtaagtaaca ... gtttgatcagCTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCG
EST: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCG CTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCEST: gi|88736975|gb|CI760483.1|CI760483
genomic: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCGgtaagtaaca ... gtttgatcagCTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACC
EST: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCG CTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCGEST: gi|88763877|gb|CI773293.1|CI773293
genomic: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCGgtaagtaaca ... gtttgatcagCTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCG
EST: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCG CTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCGEST: gi|58673905|gb|CK062591.1|CK062591
genomic: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCGgtaagtaaca ... gtttgatcagCTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCG
EST: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCG CTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCGEST: gi|88400151|gb|CI590841.1|CI590841
genomic: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCGgtaagtaaca ... gtttgatcagCTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCG
EST: GGGCACCAAGAAGAACACCGGCAACTGGCGTGCCTGGCCCTACATCCTCG CTAACGAGTGGTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCGEST: gi|58693491|gb|CK082178.1|CK082178
genomic: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCGgtaagtaaca ... gtttgatcagCTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCG
EST: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCG CTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCG
genomic: GGCCACCAAGAAGAACACCGGCAACTGGCGTGCCTGCCCCTACATCCTCGgtaagtaaca ... gtttgatcagCTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCG
ttgatggtgagatataagcgagtgaagtgactgatgtttgcaatggtttgatcagCTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCGTGAACTACATGAAGACGCGGCTCGGGCAGGAGAGCGCCATTGCCGCCAA
gactgat putative branch site (score: 9)
agatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaacaacatcttcctcgtcgattgccaagcttgttcgtctccattgatggtgagatataagcgagtgaagtgactgatgtttgcaatggtttgatcagCTAACGAGTGCTGCGAGAGGCTGGCCTACTATGGCATGAGCACCAACCTCGTGAACTACATGAAGACGCGGCTCGGGCAGGAGAGCGCCATTGCCGCCAA
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