Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29672759|gb|CB669034.1|CB669034EST: GGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACT AGACCATTCAGTTCATGAGCTGAATACAGAAAGTAAGAGTTCTACTGGAAA
genomic: GGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACTgtaagacact ... tgtttttcagAGACCATTCAGTTCATGAGCTGAATACAGAAAGTAAGAGTTCTACTGGAAA
EST:
gi|86833601|gb|CI337175.1|CI337175EST: GGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACT AGACCATTCAGTTCATGAGCTGAATACAGAAAGTAAGAGTTCTACTGGAAA
genomic: GGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACTgtaagacact ... tgtttttcagAGACCATTCAGTTCATGAGCTGAATACAGAAAGTAAGAGTTCTACTGGAAA
EST:
gi|29628474|gb|CB633485.1|CB633485EST: GGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACT AGACCATTCAGTTCATGAGCTGAATACAGAAAGTAAGAGTTCTACTGGAAA
genomic: GGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACTgtaagacact ... tgtttttcagAGACCATTCAGTTCATGAGCTGAATACAGAAAGTAAGAGTTCTACTGGAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgtggactggtaatattttcagtgaagttcatctatgctatttctgtttttcagAGACCATTCAGTTCATGAGCTGAATACAGAAAGTAAGAGTTCTACTGGAAATACCAAAGCTGCACAAGCTTAGTGGAGTGCTAAAGGTTGAGGAGACAAG
ctatttctgtttttc CT-rich tract
taatattttca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagacactttctctacacatttttatgtggactggtaatattttcagtgaagttcatctatgctatttctgtttttcagAGACCATTCAGTTCATGAGCTGAATACAGAAAGTAAGAGTTCTACTGGAAATACCAAAGCTGCACAAGCTTAGTGGAGTGCTAAAGGTTGAGGAGACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA