Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88409277|gb|CI559375.1|CI559375EST: CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCAC ATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
genomic: CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCACgtaagcatcg ... ttggttgcagATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
EST:
gi|89163572|gb|CI100462.1|CI100462EST: CGTACCCGTTCGACGCCACGGCCGAGCCAGGGTACGTCTATGACTGCCAC ATTCTGGGTCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
genomic: CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCACgtaagcatcg ... ttggttgcagATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
EST:
gi|88456565|gb|CI547281.1|CI547281EST: CCCGGCTACGTCTATCACTGCCAC ATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
genomic: CCCGGCTACGTCTATCACTGCCACgtaagcatcg ... ttggttgcagATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
EST:
gi|88249151|gb|CI249000.1|CI249000EST: CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCAC ATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
genomic: CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCACgtaagcatcg ... ttggttgcagATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
EST:
gi|88383134|gb|CI538162.1|CI538162EST: GGCCGAGCCCGGGTACGTCTATCACTGCCAC ATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
genomic: GGCCGAGCCCGGCTACGTCTATCACTGCCACgtaagcatcg ... ttggttgcagATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
EST:
gi|88232947|gb|CI232796.1|CI232796EST: CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCAC ATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAACTGATCAAA
genomic: CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCACgtaagcatcg ... ttggttgcagATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
EST:
gi|88246331|gb|CI246180.1|CI246180EST: CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCAC ATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
genomic: CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCACgtaagcatcg ... ttggttgcagATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaaaaagcgaatagtaacaagaggaagtaactacagttatatttacaaatttacatgttgacactaacacgtttgtttttactgtttgattggttgcagATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAATGAAGACATTTTTAAGGAAATGATGATCAGAGTACAAGAAGCAATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA