1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgttatatctgaacttataaataatttatctgcgcaagtattagtttcaccaacatgctgtgggtaatactgttacagGACTCAGAGAGTGCAACCAATCATAGTAGATGCTGGAATATACTTGGCAGGAAGAAATCAGTTCTTCCAAGCCACAGAGAAACGTGATACTCCTGATGGT
species | Oryza sativa |
transcript | LOC_Os01g03160.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCAAGGCATCTCAACTTCATCGATCACACTAGTGATATTGGATGGAAAGA GACTCAGAGAGTGCAACCAATCATAGTAGATGCTGGAATATACTTGGCAGGEST: gi|58691877|gb|CK080564.1|CK080564
genomic: CCAAGGCATCTCAACTTCATCGATCACACTAGTGATATTGGATGGAAAGAgtatgttata ... actgttacagGACTCAGAGAGTGCAACCAATCATAGTAGATGCTGGAATATACTTGGCAGG
EST: CATCGATCACACTAGTGATATTGGATGGAAAGA GACTCAGAGAGTGCAACCAATCATAGTAGATGCTGGAATATACTTGGCAGG
genomic: CATCGATCACACTAGTGATATTGGATGGAAAGAgtatgttata ... actgttacagGACTCAGAGAGTGCAACCAATCATAGTAGATGCTGGAATATACTTGGCAGG
atttatctgcgcaagtattagtttcaccaacatgctgtgggtaatactgttacagGACTCAGAGAGTGCAACCAATCATAGTAGATGCTGGAATATACTTGGCAGGAAGAAATCAGTTCTTCCAAGCCACAGAGAAACGTGATACTCCTGATGGT
tattagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttatatctgaacttataaataatttatctgcgcaagtattagtttcaccaacatgctgtgggtaatactgttacagGACTCAGAGAGTGCAACCAATCATAGTAGATGCTGGAATATACTTGGCAGGAAGAAATCAGTTCTTCCAAGCCACAGAGAAACGTGATACTCCTGATGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA