1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatggtggtaaccttcagcatattgccgcatgagagctctgcatagttctagttctgtctgaaaactgtttaattgatctgcccttgtagGACGTGGAATGCCGGTTTTGGAGTGGTCAGCTAGGGTTAAAATTGCAGCTGGCTCAGCTCGAGGGATAGCATATCTTCATGAAGATT
species | Oryza sativa |
transcript | LOC_Os01g02040.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTTGTCTATGATTTTGTGCCCAATGACACACTGCACCATCATCTTCATG GACGTGGAATGCCGGTTTTGGAGTGGTCAGCTAGGGTTAAAATTGCAGCTGEST: gi|66929099|gb|CX115947.1|CX115947
genomic: GCTTGTCTATGATTTTGTGCCCAATGACACACTGCACCATCATCTTCATGgtatggtggt ... gcccttgtagGACGTGGAATGCCGGTTTTGGAGTGGTCAGCTAGGGTTAAAATTGCAGCTG
EST: GCTTGTCTATGATTTTGTGCCCAATGACACACTGCACCATCATCTTCATG GACGTGGAATGCCGGTTTTGGAGTGGTCAGCTAGGGTTAAAATTGCAGCTG
genomic: GCTTGTCTATGATTTTGTGCCCAATGACACACTGCACCATCATCTTCATGgtatggtggt ... gcccttgtagGACGTGGAATGCCGGTTTTGGAGTGGTCAGCTAGGGTTAAAATTGCAGCTG
gctctgcatagttctagttctgtctgaaaactgtttaattgatctgcccttgtagGACGTGGAATGCCGGTTTTGGAGTGGTCAGCTAGGGTTAAAATTGCAGCTGGCTCAGCTCGAGGGATAGCATATCTTCATGAAGATT
aattgat putative branch site (score: 4)
tctgccctt CT-rich tract
aaaactgtttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtggtaaccttcagcatattgccgcatgagagctctgcatagttctagttctgtctgaaaactgtttaattgatctgcccttgtagGACGTGGAATGCCGGTTTTGGAGTGGTCAGCTAGGGTTAAAATTGCAGCTGGCTCAGCTCGAGGGATAGCATATCTTCATGAAGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA