Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtacatacgaaaatgtttgtgttacatgtctaatgtgacaatttactactatcactgaatgaaatgaacacaaataaacaagcatgattgttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAGGCAGGCTGTGGATATCTCTCCCTTGAGGAGGGTCAACCAGGCAATCTAC

Basic information

species Oryza sativa
transcript LOC_Os01g01060.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g01060.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G156673_T02 (Zea mays), 3'ss of exon 1
-----gtacatacgaaaatgtttgtgttacatgtctaatgtgacaatttactactatcactgaatgaaatgaacacaaataaacaagcatgattgttgt-tcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAGGCAGGCTGTGGATATCTCTCCCTTGAGGAGGGTCAACCAGGCAATCTAC
     || | |  || |  |       || | |   ||| | | |  ||||   | |       ||| |||   |    |    | |      | |||| |  ||| || || |||||||| || |||||||| || || ||||| | ||||||||||||||| ||||||||||| ||| |||||||||| |||||||| ||||||
gtcatgtgcttttgatatggg--aaactata-gctcaatat-atagcttac--atgttgggtcgtgagatgtgaaactgttgtgatgtgctgctattgtcttgcagTGGACCCCGTGAGGATGCCACCCGTATTGGTTCCGCTGGTGTTGTGAGGAGGCAGGCCGTGGATATCTCACCCCTGAGGAGGGTGAACCAGGCCATCTAC

upper sequence: LOC_Os01g01060.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G078985_T01 (Zea mays), 3'ss of exon 2
gtacatacgaaaatgtttgtgttacatgtctaatgtgacaatttactactatcactgaatgaaatga-acacaaataaacaagcatgattgt-tgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAGGCAGGCTGTGGATATCTCTCCCTTGAGGAGGGTCAACCAGGCAATCTAC
 ||  | | |  |  | |    || |  || ||    |    ||||   | |       ||| |||  | ||   |   |     ||||  | | ||  ||| || || |||||||| || |||||||| || || ||||| | |||||| |||||||||||||||||||| ||| |||| ||||| |||||||| ||||||
ttatgtgctatgagatgtcaactataactcaaact--attgattacacatgttggctcttgagatgtcaaactggtgttctgtgctgatattgtctttgcagTGGACCACGTGAGGATGCCACCCGTATTGGTTCAGCTGGTGTTGTGAGAAGGCAGGCTGTGGATATCTCACCCCTGAGAAGGGTGAACCAGGCCATCTAC

upper sequence: LOC_Os01g01060.1 (Oryza sativa), 3'ss of exon 2
lower sequence: PP1S114_143V6.1 (Physcomitrella patens), 3'ss of exon 2
------------------------------------------------gtacatacgaaaatgtttgtgttacatgtctaatgtgacaatttactactatcactgaatgaaatgaa---cacaaataaacaag-catgattgt--tgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAGGCAGGCTGTGGATATCTCTCCCTTGAGGAGGGTCAACCAGGCAATCTAC
                                                |   ||  |   |||   | |      |  |        ||||||    |||  | | ||||  ||     |   |    | | | |  | | |   ||   |||| || || ||||| |||||||| |||||||| || ||||| |   | ||||||||||| |||||||| ||||| ||||||||||| |||||||| ||||||
gtaggttatctcgaacacttgtttagctgcatattggggggagaggcgggggatgggcgcatgggcgggaggagaggttgcaacaggaatttagggttat-gcgggatgatgtggggctcgggagctgagaggtcgcggtgggaatgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAGGCAGGCCGTGGATATTTCTCCATTGAGGAGGGTGAACCAGGCGATCTAC

upper sequence: LOC_Os01g01060.1 (Oryza sativa), 3'ss of exon 2
lower sequence: PP1S10_385V6.1 (Physcomitrella patens), 3'ss of exon 2
gtacatacgaaaatgtttgtgttac---atgtc-taatgtgacaatttactactatcactgaatgaaatgaacacaaat--aaacaagcatgatt----gttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAGGCAGGCTGTGGATATCTCTCCCTTGAGGAGGGTCAACCAGGCAATCTAC
|| |  ||| ||     |||| ||    |  || | | |  ||||||   |  | | | | |||    | ||      |   | | |   || ||     |   |  ||| || || ||||| || || || ||||| || ||||| || | | | || ||||| ||||||||||| || || ||||||||||| |||||||| ||||||
gttcggacgcaatcccgtgtgatatcgaacatcctgaggacacaattc-tttttctgattaaatattgtcaatttgtctctgagcgacagtgttttcccatacattgcagTGGACCCCGTGAAGATGCCACACGTATTGGATCTGCGGGAGTTATCAGAAGGCAAGCTGTGGATATTTCCCCATTGAGGAGGGTTAACCAGGCCATCTAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58678717|gb|CK067404.1|CK067404
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|33679114|gb|CF307353.1|CF307353
EST:     ATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: ATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|163918373|gb|EG714833.1|EG714833
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGA
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGA
EST: gi|94362156|gb|CI052473.1|CI052473
EST:     ATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: ATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|55435164|gb|CV730712.1|CV730712
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCT
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCT
EST: gi|38482123|gb|CF966180.1|CF966180
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|33802774|gb|CF327258.1|CF327258
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|86524798|gb|CI165004.1|CI165004
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|33656960|gb|CF279574.1|CF279574
EST:     ACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: ACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|55433259|gb|CV729681.1|CV729681
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|163928665|gb|EG711202.1|EG711202
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|86509223|gb|CI151856.1|CI151856
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|33808604|gb|CF330188.1|CF330188
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|66914074|gb|CX100922.1|CX100922
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|86537429|gb|CI177635.1|CI177635
EST:     CTCACCGACGCCAACCCCATGCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|86527571|gb|CI167777.1|CI167777
EST:     CTCACCGACGCCTACCCCATGCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGGG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|88204808|gb|CI202659.1|CI202659
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|86527351|gb|CI167557.1|CI167557
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|58690682|gb|CK079369.1|CK079369
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|38482114|gb|CF966172.1|CF966172
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|38477454|gb|CF961587.1|CF961587
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAANCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|88242758|gb|CI242607.1|CI242607
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|58587368|gb|CF985676.1|CF985676
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|11173123|gb|AU164624.1|AU164624
EST:     TCACCGACGNCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAAG                         CGGCCCGCGTNAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGNA
genomic: TCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAAC-AGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGA
EST: gi|88360342|gb|CI612061.1|CI612061
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTC
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTC
EST: gi|88211131|gb|CI212564.1|CI212564
EST:     CTTACCGACGCCAACCCGATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|86523283|gb|CI163489.1|CI163489
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|25806933|gb|CA762894.1|CA762894
EST:     CTCACCGACGCCAACCCCATCCAGGTCATTGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|86598408|gb|CI355025.1|CI355025
EST:     TCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGA-GACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: TCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|86862392|gb|CI345504.1|CI345504
EST:     TCAACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: TC-ACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|58594681|gb|CF992989.1|CF992989
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|33813592|gb|CF332680.1|CF332680
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|88985939|gb|CI033268.1|CI033268
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|7332366|gb|AU085712.1|AU085712
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|163917701|gb|EG712087.1|EG712087
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|163922806|gb|EG712227.1|EG712227
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGT-GCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|88965610|gb|CI011748.1|CI011748
EST:     AGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: AGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|33661089|gb|CF292056.1|CF292056
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGC
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGC
EST: gi|33664686|gb|CF295653.1|CF295653
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGC
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGC
EST: gi|55432359|gb|CV729200.1|CV729200
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGAACGCAACCCGT
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGT
EST: gi|27921122|gb|CB096930.1|CB096930
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCCGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|33656959|gb|CF279573.1|CF279573
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|33664685|gb|CF295652.1|CF295652
EST:     TGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: TGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|38476792|gb|CF960925.1|CF960925
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAG
EST: gi|33690720|gb|CF318959.1|CF318959
EST:     CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAG                         CGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGA
genomic: CTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 64 (upstream exon), 61 (downstream exon)
Score: 21

AGATCATGGCTGTCCGCATCGTCAAGCACGCCATGGAGATCATCCACCTCCTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtaccaccgt ... ttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAGGCAGGCTGTGGATATCTCTCCCTTGAGGAGGGTCAACCAGGCAATCTAC




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctactatcactgaatgaaatgaacacaaataaacaagcatgattgttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAGGCAGGCTGTGGATATCTCTCCCTTGAGGAGGGTCAACCAGGCAATCTAC
                          aaataaacaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacatacgaaaatgtttgtgttacatgtctaatgtgacaatttactactatcactgaatgaaatgaacacaaataaacaagcatgattgttgttcacagCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGCTGTGAGGAGGCAGGCTGTGGATATCTCTCCCTTGAGGAGGGTCAACCAGGCAATCTAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - acgaaaa
- - - - - - -tgtttgt
- - - - - - - - - - -ttacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcatg