1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...ctttgtcaaaaaaaaataaataaataaaaacagaacacccacaaataaaactccttacatcttcgttggctacttatgttatgtcctttctaacctgtagCACGAGGATTTAAGACAGCTTTGTGCTGATCCGAAAGCAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAG
species | Oryza sativa |
transcript | LOC_Os12g04990.3 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: CAGTTGAACCAGATGTGTTGAAGGCTTGGGCTGCATCTGAGGGAATCCAG CACGAGGATTTAAGACAGCTTTGTGCTGATCCGAGAGCAAGATCTGCTGTCEST: gi|29625658|gb|CB630669.1|CB630669
genomic: CAGTTGAACCAGATGTGTTGAAGGCTTGGGCTGCATCTGAGGGAATCCAGgtaaatatgc ... taacctgtagCACGAGGATTTAAGACAGCTTTGTGCTGATCCGAAAGCAAGATCTGCTGTC
EST: CAGTTGAACCAGATGTGTTGAAGGCTTGGGCTGCATCTGAGGGAATCCAG CACGAGGATTTAAGACAGCTTTGTGCTGATCCGAGAGCAAGATCTGCTGTCEST: gi|89185151|gb|CI050885.1|CI050885
genomic: CAGTTGAACCAGATGTGTTGAAGGCTTGGGCTGCATCTGAGGGAATCCAGgtaaatatgc ... taacctgtagCACGAGGATTTAAGACAGCTTTGTGCTGATCCGAAAGCAAGATCTGCTGTC
EST: CAGTTGAACCAGATGTGTTGAAGGCTTGGGCTGCATCTGAGGGAATCCAG CACGAGGATTTAAGACAGCTTTGTGCTGATCCGAAAGCAAGATCTGCTGTCEST: gi|29622085|gb|CB627096.1|CB627096
genomic: CAGTTGAACCAGATGTGTTGAAGGCTTGGGCTGCATCTGAGGGAATCCAGgtaaatatgc ... taacctgtagCACGAGGATTTAAGACAGCTTTGTGCTGATCCGAAAGCAAGATCTGCTGTC
EST: CAGTTGAACCAGATGTGTTGAAGGCTTGGGCTGCATCTGAGGGAATCCAG CACGAGGATTTAAGACAGCTTTGTGCTGATCCGAGAGCAAGATCTGCTGTCEST: gi|29626658|gb|CB631669.1|CB631669
genomic: CAGTTGAACCAGATGTGTTGAAGGCTTGGGCTGCATCTGAGGGAATCCAGgtaaatatgc ... taacctgtagCACGAGGATTTAAGACAGCTTTGTGCTGATCCGAAAGCAAGATCTGCTGTC
EST: CAGTTGAACCAGATGTGTTGAAGGCTTGGGCTGCATCTGAGGGAATCCAG CACGAGGATTTAAGACAGCTTTGTGCTGATCCGAGAGCAAGATCTGCTGTCEST: gi|313081138|gb|HO213724.1|HO213724
genomic: CAGTTGAACCAGATGTGTTGAAGGCTTGGGCTGCATCTGAGGGAATCCAGgtaaatatgc ... taacctgtagCACGAGGATTTAAGACAGCTTTGTGCTGATCCGAAAGCAAGATCTGCTGTC
EST: CAGTTGAACCAGATGTGTTGAAGGCTTGGGCTGCATCTGAGGGAATCCAG CACGAGGATTTAAGACAGCTTTGTGCTGATCCGAGAGCAAGATCTGCTGTCEST: gi|25806439|gb|CA762400.1|CA762400
genomic: CAGTTGAACCAGATGTGTTGAAGGCTTGGGCTGCATCTGAGGGAATCCAGgtaaatatgc ... taacctgtagCACGAGGATTTAAGACAGCTTTGTGCTGATCCGAAAGCAAGATCTGCTGTC
EST: CAGTTGAACCAGATGTGTTGAAGGCTTGGGCTGCATCTGAGGGAATCCAG CACGAGGATTTAAGACAGCTTTGTGCTGATCCGAGAGCAAGATCTGCTGTCEST: gi|88907984|gb|CI090580.1|CI090580
genomic: CAGTTGAACCAGATGTGTTGAAGGCTTGGGCTGCATCTGAGGGAATCCAGgtaaatatgc ... taacctgtagCACGAGGATTTAAGACAGCTTTGTGCTGATCCGAAAGCAAGATCTGCTGTC
EST: CATCTGAGGGAATCCAG CACGAGGATTTAAGACAGCTTTGTGCTGATCCGAAAGCAAGATCTGCTGTCEST: gi|29665115|gb|CB661390.1|CB661390
genomic: CATCTGAGGGAATCCAGgtaaatatgc ... taacctgtagCACGAGGATTTAAGACAGCTTTGTGCTGATCCGAAAGCAAGATCTGCTGTC
EST: CAGTTGAACCAGATGTGTTGAAGGCTTGGGCTGCATCTGAGGGAATCCAG CACGAGGATTTAAGACAGCTTTGTGCTGATCCGAAAGCAAGATCTGCTGTCEST: gi|29674288|gb|CB670563.1|CB670563
genomic: CAGTTGAACCAGATGTGTTGAAGGCTTGGGCTGCATCTGAGGGAATCCAGgtaaatatgc ... taacctgtagCACGAGGATTTAAGACAGCTTTGTGCTGATCCGAAAGCAAGATCTGCTGTC
EST: CAGTTGAACCAGATGTGTTGAAGGCTTGGGCTGCATCTGAGGGAATCCAG CACGAGGATTTAAGACAGCTTTGTGCTGATCCGAAAGCAAGATCTGCTGTCEST: gi|86851191|gb|CI312592.1|CI312592
genomic: CAGTTGAACCAGATGTGTTGAAGGCTTGGGCTGCATCTGAGGGAATCCAGgtaaatatgc ... taacctgtagCACGAGGATTTAAGACAGCTTTGTGCTGATCCGAAAGCAAGATCTGCTGTC
EST: CAGTTGAACCAGATGTGTTGAAGGCTTGGGCTGCATCTGAGGGAATCCAG CACGAGGATTTAAGACAGCTTTGTGCTGATCCGAAAGCAAGATCTGCTGTC
genomic: CAGTTGAACCAGATGTGTTGAAGGCTTGGGCTGCATCTGAGGGAATCCAGgtaaatatgc ... taacctgtagCACGAGGATTTAAGACAGCTTTGTGCTGATCCGAAAGCAAGATCTGCTGTC
taaaactccttacatcttcgttggctacttatgttatgtcctttctaacctgtagCACGAGGATTTAAGACAGCTTTGTGCTGATCCGAAAGCAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAG
ttctaac putative branch site (score: 1)
tgtcctttct CT-rich tract
ttatgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttgtcaaaaaaaaataaataaataaaaacagaacacccacaaataaaactccttacatcttcgttggctacttatgttatgtcctttctaacctgtagCACGAGGATTTAAGACAGCTTTGTGCTGATCCGAAAGCAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA