1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' |
gtagttatactgttgctagtttatttttcctccatttccttttaatgaatcttctataatgctaaattaattcttctgtatcacagCCTTAAGCATGGGCTCAACATGCTGCAGAATATGCAAAGTGATAACAAGAGCTCAAAAAAATCACTGAAG
species | Oryza sativa |
transcript | LOC_Os11g43970.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: AATAAAGTCGAGATCTCCAAGGATGGTAAACTTGTATTGGCGAGCGAAAG CCTTAAGCATGGGCTCAACATGCTGCAGAATATGCAAAGTGATAACAAGAGEST: gi|58687870|gb|CK076557.1|CK076557
genomic: AATAAAGTCGAGATCTCCAAGGATGGTAAACTTGTATTGGCGAGCGAAAGgtagttatac ... tgtatcacagCCTTAAGCATGGGCTCAACATGCTGCAGAATATGCAAAGTGATAACAAGAG
EST: TGGCGAGCGAAAG CCTTAAGCATGGGCTCAACATGCTGCAGAATATGCAAAGTGATAACAAGAGEST: gi|58692889|gb|CK081576.1|CK081576
genomic: TGGCGAGCGAAAGgtagttatac ... tgtatcacagCCTTAAGCATGGGCTCAACATGCTGCAGAATATGCAAAGTGATAACAAGAG
EST: AGGATGGTAAACTTGTATTGGCGAGCGAAAG CCTTAAGCATGGGCTCAACATGCTGCAGAATATGCAAAGTGATAACAAGAGEST: gi|58659009|gb|CK047689.1|CK047689
genomic: AGGATGGTAAACTTGTATTGGCGAGCGAAAGgtagttatac ... tgtatcacagCCTTAAGCATGGGCTCAACATGCTGCAGAATATGCAAAGTGATAACAAGAG
EST: AATAAAGTCGAGATCTCCAAGGATGGTAAACTTGTATTGGCGAGCGAAAG CCTTAAGCATGGGCTCAACATGCTGCAGAATATGCAAAGTGATAACAAGAGEST: gi|29614540|gb|CB619553.1|CB619553
genomic: AATAAAGTCGAGATCTCCAAGGATGGTAAACTTGTATTGGCGAGCGAAAGgtagttatac ... tgtatcacagCCTTAAGCATGGGCTCAACATGCTGCAGAATATGCAAAGTGATAACAAGAG
EST: AATAAAGTCGAGATCTCCAAGGATGGTAAACTTGTATTGGCGAGCGAAAG CCTTAAGCATGGGCTCAACATGCTGCAGAATATGCAAAGTGATAACAAGAG
genomic: AATAAAGTCGAGATCTCCAAGGATGGTAAACTTGTATTGGCGAGCGAAAGgtagttatac ... tgtatcacagCCTTAAGCATGGGCTCAACATGCTGCAGAATATGCAAAGTGATAACAAGAG
ccatttccttttaatgaatcttctataatgctaaattaattcttctgtatcacagCCTTAAGCATGGGCTCAACATGCTGCAGAATATGCAAAGTGATAACAAGAGCTCAAAAAAATCACTGAAG
ttcttctgt CT-rich tract
ttttaatgaatcttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagttatactgttgctagtttatttttcctccatttccttttaatgaatcttctataatgctaaattaattcttctgtatcacagCCTTAAGCATGGGCTCAACATGCTGCAGAATATGCAAAGTGATAACAAGAGCTCAAAAAAATCACTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG