1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...catatttctagttaaaattagtagattgtatcatttggctagataaatatctcatatagttttctgatgtctacatttctaccacttgcctgtcaattagGTAAATGTTATGGACACAATGAGCAGACTGAGCCATGATGCAGATGCGGAAGTTTCTATG
species | Oryza sativa |
transcript | LOC_Os09g15750.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: GAAGGGCGGTTCCTCTAGCTCTGGGCTTGCTTTGCATATCCAATCCAAAG GTAAATGTTATGGACACAATGAGCAGACTGAGCCATGATEST: gi|29644400|gb|CB649407.1|CB649407
genomic: GAAGGGCGGTTCCTCTAGCTCTGGGCTTGCTTTGCATATCCAATCCAAAGgtatggtaca ... tgtcaattagGTAAATGTTATGGACACAATGAGCAGACTGAGCCATGAT
EST: GAAGGGCGGTTCCTCTAGCTCTGGGCTTGCTTTGCATATCCAATCCAAAG GTAAATGTTATGGACACAATGAGCAGACTGAGCCATGATGCAGATGCGGAAEST: gi|218478818|gb|FG953673.1|FG953673
genomic: GAAGGGCGGTTCCTCTAGCTCTGGGCTTGCTTTGCATATCCAATCCAAAGgtatggtaca ... tgtcaattagGTAAATGTTATGGACACAATGAGCAGACTGAGCCATGATGCAGATGCGGAA
EST: GAAGGGCGG-TCCTCTAGCTCTGGGTTTGCTTTGCATATCCAATCCAAAG GTAAATGTTATGGACACAATGAGTAGACTGAGCCATGATGCAGATGCGGAA
genomic: GAAGGGCGGTTCCTCTAGCTCTGGGCTTGCTTTGCATATCCAATCCAAAGgtatggtaca ... tgtcaattagGTAAATGTTATGGACACAATGAGCAGACTGAGCCATGATGCAGATGCGGAA
aatatctcatatagttttctgatgtctacatttctaccacttgcctgtcaattagGTAAATGTTATGGACACAATGAGCAGACTGAGCCATGATGCAGATGCGGAAGTTTCTATG
ttctgat putative branch site (score: 19)
cttgcct putative PPT
atatagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catatttctagttaaaattagtagattgtatcatttggctagataaatatctcatatagttttctgatgtctacatttctaccacttgcctgtcaattagGTAAATGTTATGGACACAATGAGCAGACTGAGCCATGATGCAGATGCGGAAGTTTCTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - tcatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acttgcc