1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...ctgtctttgtacacgtatcagcatgtcttctttcatttgcatattgatgatcttcttcaactgctgaaatgccatcaatctggttatatttactttccagGCTTTGGATGCTGCCTTCAACCATGACTTGGAGCAGCAGCAAAAATCATCGAAATCCGGGAATAAGCCCAATGGGTTTTAACTTTAGCCGAGAAGACTAG
species | Oryza sativa |
transcript | LOC_Os08g25060.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: AACCTGATGTGAGACACGAAATATCTCAACTAGTAAAGCCCATGACCCAG GCTTTGGATGCTGCCTTCAACCATGACTTGGAGCAGCAGCAAAAATCATCGEST: gi|88255475|gb|CI354299.1|CI354299
genomic: AACCTGATGTGAGACACGAAATATCTCAACTAGTAAAGCCCATGACCCAGgttcttatct ... tactttccagGCTTTGGATGCTGCCTTCAACCATGACTTGGAGCAGCAGCAAAAATCATCG
EST: AACCTGATGTGAGACACGAAATATCTCAAGTAGTAAAGCCCATGACCCAG GCTTTGGATGCTGCCTTCAACCATGACTTGGAGCAGCAGCAAAAATCATCGEST: gi|86485025|gb|CI127658.1|CI127658
genomic: AACCTGATGTGAGACACGAAATATCTCAACTAGTAAAGCCCATGACCCAGgttcttatct ... tactttccagGCTTTGGATGCTGCCTTCAACCATGACTTGGAGCAGCAGCAAAAATCATCG
EST: AACCTGATGTGAGACACGAAATATCTCAACTAGTAAAGCCCATGACCCAG GCTTTGGATGCTGCCTTCAACCATGACTTGGAGCAGCAGCAAAAATCATCGEST: gi|86832855|gb|CI332461.1|CI332461
genomic: AACCTGATGTGAGACACGAAATATCTCAACTAGTAAAGCCCATGACCCAGgttcttatct ... tactttccagGCTTTGGATGCTGCCTTCAACCATGACTTGGAGCAGCAGCAAAAATCATCG
EST: AACCTGATGTGAGACACGAAATATCTCAACTAGTAAAGCCCATGACCCAG GCTTTGGATGCTGCCTTCAACCATGACTTGGAGCAGCAGCAAAAATCATCG
genomic: AACCTGATGTGAGACACGAAATATCTCAACTAGTAAAGCCCATGACCCAGgttcttatct ... tactttccagGCTTTGGATGCTGCCTTCAACCATGACTTGGAGCAGCAGCAAAAATCATCG
gatgatcttcttcaactgctgaaatgccatcaatctggttatatttactttccagGCTTTGGATGCTGCCTTCAACCATGACTTGGAGCAGCAGCAAAAATCATCGAAATCCGGGAATAAGCCCAATGGGTTTTAACTTTAGCCGAGAAGACTAG
tattgat putative branch site (score: 11)
tttactttcc putative PPT
ttatatttacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtctttgtacacgtatcagcatgtcttctttcatttgcatattgatgatcttcttcaactgctgaaatgccatcaatctggttatatttactttccagGCTTTGGATGCTGCCTTCAACCATGACTTGGAGCAGCAGCAAAAATCATCGAAATCCGGGAATAAGCCCAATGGGTTTTAACTTTAGCCGAGAAGACTAG
- - - -tgtacac
- - - - - - - - - - gcatgtc
- - - - - - - - - - - - - - - - -catttgc
- - - - - - - - - - - - - - - - - - - - - -ttgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccatc