1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
...ttttatacatctgttttgggccttctcatccctgatgatttatttacatgcacattcattagttcgatccttggtacttttgtcttgttgggaatttcagGCTTGGAGAGTCATTCATTAATTCATCTACCATGTTGGAGAACAAAAATCACATCCACCAGGGTCGCCATACTCGCTCAACTAGTGCAATTCCGAAAAGC
species | Oryza sativa |
transcript | LOC_Os08g22864.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: TTAGCATCTCTTAGTGATTCATTGGAATATTTAGCGGATTCAGTTGAAAG GGCTTGGAGAGTCATTCATTAATTCATCTACCATGTTGGEST: gi|29665535|gb|CB661810.1|CB661810
genomic: TTAGCATCTCTTAGTGATTCATTGGAATATTTAGCGGATTCAGTTGAAAGgtaaatcatc ... ggaatttcagG-CTTGGAGAGTCATTCATTAATTCATCTACCATGTTGG
EST: TTAGCATCTCTTAGTGATTCATTGGAATATTTAGCGGATTCAGTTGAAAG GCTTGGAGAGTCATTCATTAATTCATCTACCATGTTGGAGAACAAAA-TCAEST: gi|218497128|gb|FG954379.1|FG954379
genomic: TTAGCATCTCTTAGTGATTCATTGGAATATTTAGCGGATTCAGTTGAAAGgtaaatcatc ... ggaatttcagGCTTGGAGAGTCATTCATTAATTCATCTACCATGTTGGAGAACAAAAATCA
EST: TTAGCATCTCTTAGTGATTCATTGGAATATTTAGCGGATTCAGTTGAAAG GCTTGGAGAGTCATTCATTAATTCATCTACCATGTTGGAGAACAAAAATCA
genomic: TTAGCATCTCTTAGTGATTCATTGGAATATTTAGCGGATTCAGTTGAAAGgtaaatcatc ... ggaatttcagGCTTGGAGAGTCATTCATTAATTCATCTACCATGTTGGAGAACAAAAATCA
acatgcacattcattagttcgatccttggtacttttgtcttgttgggaatttcagGCTTGGAGAGTCATTCATTAATTCATCTACCATGTTGGAGAACAAAAATCACATCCACCAGGGTCGCCATACTCGCTCAACTAGTGCAATTCCGAAAAGC
attcatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttatacatctgttttgggccttctcatccctgatgatttatttacatgcacattcattagttcgatccttggtacttttgtcttgttgggaatttcagGCTTGGAGAGTCATTCATTAATTCATCTACCATGTTGGAGAACAAAAATCACATCCACCAGGGTCGCCATACTCGCTCAACTAGTGCAATTCCGAAAAGC
- - - -catctgt
- - - - - - - - - -gccttct
- - - - - - - - - - - - - - - cctgatg
- - - - - - - - - - - - - - - - - - - - - - tacatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - cattcat