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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaatgttcaactactttagagctcttgctttcttacacttggatgattgaattgaaacagtaacaattggctcatggtttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTGAACCCATTGTTCCATCTGGCAAGCAG

Basic information

species Oryza sativa
transcript LOC_Os07g47290.1
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g47290.1 (Oryza sativa), 3'ss of exon 19
lower sequence: GRMZM2G427620_T01 (Zea mays), 3'ss of exon 9
-------------------------------------------------------------------------------------------------gtacaatgttcaactactttagagctcttgctttcttac--acttggatgattgaattg---aaacagtaacaattggctcatggtttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTGAACCCATTGTTCCATCTGGCAAGCAG
                                                                                                   |   ||  |    || |    | |    ||||  | |  | |||   |      |||   |    |||||| ||  || |||| |||||  ||||| ||||||||||||| ||||| ||||| ||||||||||| |||||||                             
gtgagtggcatgaaccagctctctccctttttactcaaatccacattgcctatgtacttcccagttgcactcatatgagctgctgcgtttttgtttaacagggtggacttgcacctggtggtttcaactttgatgccaaattgtcagtaccttttgtgtaggttgtaacatttctct-atggcttcaatcagGCTAGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGG-----------------------------

upper sequence: LOC_Os07g47290.1 (Oryza sativa), 3'ss of exon 19
lower sequence: GRMZM2G313536_T01 (Zea mays), 3'ss of exon 13
-------------------------------------------------------------------------------------------------gtacaatgttcaactactttagagctcttgctttcttac--acttggatgattgaattg---aaacagtaacaattggctcatggtttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTGAACCCATTGTTCCATCTGGCAAGCAG
                                                                                                   |   ||  |    || |    | |    ||||  | |  | |||   |      |||   |    |||||| |||    |||| |||||  ||||| ||||||||||||| ||||| ||||| ||||||||||| |||||||                             
gtgagtggcatgaaccagctctctccctttttactcaaatccacattgcctatgtacttcccagttgcactcatatgagctgctgcgtttttgtttaacagggtggacttgcacctggtggtttcaactttgatgccaaattgtcagtaccttttgtgtagGTTGTAACA-TTGCTCTATGGCTTCAATCAGGCTAGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGG-----------------------------

upper sequence: LOC_Os07g47290.1 (Oryza sativa), 3'ss of exon 19
lower sequence: GRMZM2G335948_T01 (Zea mays), 3'ss of exon 1
------gtacaatgttcaactactttagagctcttgctttcttac--acttggatgattgaattg---aaacagtaacaattggctcatggtttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTGAACCCATTGTTCCATCTGGCAAGCAG
       ||   ||  |    || |    | |    ||||  | |  | |||   |      |||   |    |||||| |||    |||| |||||  ||||| ||||||||||||| ||||| ||||| ||||||||||| ||||||||||| |||  |||| |||| |||||||||
tgtttaatagggtggacttgcacctggtggtttcaactttgatgccaaattgtcagtaccttttgtgtaggttgtaaca-ttgctctatggcttcaatcagGCTAGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTGAGCCCGCTGTTGCATCCGGCAAGCAG

upper sequence: LOC_Os07g47290.1 (Oryza sativa), 3'ss of exon 19
lower sequence: GRMZM2G005493_T01 (Zea mays), 3'ss of exon 19
---------gtacaatgttcaactactttagagctcttgctttcttacacttggat----gattgaattgaaacagt-------aacaattggctcatggtttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTGAACCCATTGTTCCATCTGGCAAGCAG
          | | |  ||    || |||  |  |||||  | |  |    |||||     | ||   |    ||||       |||| |    | |||| ||  || ||||||||||||||||||| ||| | |||||||||||||| || ||||||||||| |||| |||||| || ||||| |||
gtatggcgcttcctagttttttgtagtttcaatttcttgtctgccaaggactggatttggaactgcggtttgtcagtgcgttgtaacattgcttttatggattggaacagGCTGGGAAAGGAGACTTTGAGGCGCTAGAGAAGAAGGTCCTTGAGTGGGGTGAGCCCACTGTTCCGTCCGGCAAACAG

upper sequence: LOC_Os07g47290.1 (Oryza sativa), 3'ss of exon 19
lower sequence: GRMZM2G081682_T01 (Zea mays), 3'ss of exon 19
gtacaatgttcaactactttagagctcttgctttcttacacttggatgattgaattgaaac-------agtaacaa--ttggctcatggtttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTGAACCCATTGTTCCATCTGGCAAGCAG
||||     |   | | ||| ||| |  || ||||||   |  | | ||| | |||  ||         ||   ||  |||    |||| |||||| ||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||| |||| |||| |||| ||||| |||
gtactggacttc-caagtttggagtt--tgatttcttgttcgcgaaggatcggattcgaatttgtgtaggttgtaacattgctctatggcttcaaacagGCTGGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTGAGCCCACTGTTGCATCCGGCAAACAG

upper sequence: LOC_Os07g47290.1 (Oryza sativa), 3'ss of exon 19
lower sequence: GRMZM2G544990_T01 (Zea mays), 3'ss of exon 13
------gtacaatgttcaactactttagagctcttgctttcttac--acttggatgattgaattg---aaacagtaacaattggctcatggtttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTGAACCCATTGTTCCATCTGGCAAGCAG
        |   ||  |    || |    | |    ||||  | |  | |||   |      |||   |    |||||| |||    |||| |||||  ||||| ||||||||||||| ||||| ||||| ||||||||||| ||||||||||| |||  |||| |||| |||||||||
tgtttaacagggtggacttgcacctggtggtttcaactttgatgccaaattgtcagtaccttttgtgtaggttgtaaca-ttgctctatggcttcaatcagGCTAGGAAAGGAGACTTTGAGACGCTAGAAAAGAAGGTTCTAGAGTGGGGTGAGCCCGCTGTTGCATCCGGCAAGCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86854458|gb|CI256580.1|CI256580
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|33654092|gb|CF276706.1|CF276706
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTTTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|88985909|gb|CI033238.1|CI033238
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|29667757|gb|CB664032.1|CB664032
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|29625367|gb|CB630378.1|CB630378
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|88518358|gb|CI446012.1|CI446012
EST:     TTCGCAAGCGCTACCAGAGTTTTNATAGTGAGATCNGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAANGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|88540647|gb|CI468708.1|CI468708
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|89184253|gb|CI046818.1|CI046818
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|38476165|gb|CF960298.1|CF960298
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGAGGCTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|29642115|gb|CB647122.1|CB647122
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|88974071|gb|CI002733.1|CI002733
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|89179716|gb|CI043995.1|CI043995
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|88828748|gb|CI073618.1|CI073618
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|29643120|gb|CB648127.1|CB648127
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|44676968|gb|CR290402.1|CR290402
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|29688080|gb|CB684355.1|CB684355
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|58031342|gb|CX728885.1|CX728885
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|88514668|gb|CI442174.1|CI442174
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|29661148|gb|CB657423.1|CB657423
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|163927225|gb|EG710263.1|EG710263
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|88506732|gb|CI434238.1|CI434238
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|12622806|gb|AU173019.1|AU173019
EST:     AGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: AGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|218483389|gb|FG947207.1|FG947207
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|29657675|gb|CB653950.1|CB653950
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|58031266|gb|CX728809.1|CX728809
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|89194258|gb|CI116695.1|CI116695
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|88537783|gb|CI466758.1|CI466758
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|89172814|gb|CI022693.1|CI022693
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|88840977|gb|CI000939.1|CI000939
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|5004160|gb|AU069309.1|AU069309
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|88475673|gb|CI412944.1|CI412944
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|29665147|gb|CB661422.1|CB661422
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|88995441|gb|CI022764.1|CI022764
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|88437040|gb|CI523990.1|CI523990
EST:     GAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: GAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|29620969|gb|CB625980.1|CB625980
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|29688817|gb|CB685092.1|CB685092
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|29644690|gb|CB649697.1|CB649697
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|29637954|gb|CB642963.1|CB642963
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTTTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|88535496|gb|CI464300.1|CI464300
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|313080767|gb|HO213564.1|HO213564
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: gi|88504210|gb|CI431716.1|CI431716
EST:     TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG                         GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 70 (downstream exon)
Score: 61

GATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTGAACCCATTGTTCCATCTGGCAAGCAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacacttggatgattgaattgaaacagtaacaattggctcatggtttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTGAACCCATTGTTCCATCTGGCAAGCAG
                         cagtaac  putative branch site (score: 61)
                                             tttcaaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacaatgttcaactactttagagctcttgctttcttacacttggatgattgaattgaaacagtaacaattggctcatggtttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTGAACCCATTGTTCCATCTGGCAAGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG