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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatcgaatcgcacagcaaacaatttcaactctaaatgccattcttcttttaccatgtcaatccactgacaaaagcatatacatatactgcattttcatatatataataaattaaggccaataatttgattctgagcagGTTGGGGTGCCGAACACGAATCCGTTCGTCGACGATAACCTGTATGGTTACCCCCAGTACATGAACATGAACGAAGCCAATCCACAGCCAACTTATGAGC

Basic information

species Oryza sativa
transcript LOC_Os07g10550.1
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58603660|gb|CK014188.1|CK014188
EST:     AGCCGTTCCAGACGGATTTGTCCCTTTTCCATGACCCATATCCGCCTCAG                         GTTGGGGTGCCGAACACGAATCCGTTCGTCGACGATAACCTGTATGGTTAC
genomic: AGCCGTTCCAGACGGATTTGTCCCTTTTCCATGACCCATATCCGCCTCAGgtagatcgaa ... ttctgagcagGTTGGGGTGCCGAACACGAATCCGTTCGTCGACGATAACCTGTATGGTTAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atactgcattttcatatatataataaattaaggccaataatttgattctgagcagGTTGGGGTGCCGAACACGAATCCGTTCGTCGACGATAACCTGTATGGTTACCCCCAGTACATGAACATGAACGAAGCCAATCCACAGCCAACTTATGAGC
                                       atttgat  putative branch site (score: 5)
       attttcatatatataa  TA-rich tract