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...tggttattcgaggaaaattagtagattgtatcatttggctagataaatatcttatctagttttctgatgtctacatttctaccacttgcctgtcaattagGTAAATGTTATGGACACAATGAGTAGACTGAGCCATGATGCAGATGCGGAAGTTTCTATG
species | Oryza sativa |
transcript | LOC_Os06g48640.3 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: GAAGGGCGGTTCCTCTAGCTCTGGGTTTGCTTTGCATATCCAATCCAAAG GTAAATGTTATGGACACAATGAGTAGACTGAGCCATGATGCAGATGCGGAAEST: gi|4714418|gb|AU058385.1|AU058385
genomic: GAAGGGCGGTTCCTCTAGCTCTGGGTTTGCTTTGCATATCCAATCCAAAGgtaacagttc ... tgtcaattagGTAAATGTTATGGACACAATGAGTAGACTGAGCCATGATGCAGATGCGGAA
EST: GAAGGGCGGTTCCTCTAGCTCTGGGTTTGCTTTGCATATCCAATCCAAAG GTAAATGTTATGGACACAATGAGTAGACTGAGCCATGATGCAGATGCGGAAEST: gi|29614662|gb|CB619675.1|CB619675
genomic: GAAGGGCGGTTCCTCTAGCTCTGGGTTTGCTTTGCATATCCAATCCAAAGgtaacagttc ... tgtcaattagGTAAATGTTATGGACACAATGAGTAGACTGAGCCATGATGCAGATGCGGAA
EST: GAAGGGCGGTTCCTCTAGCTCTGGGTTTGCTTTGCATATCCAATCCAAAG GTAAATGTTATGGACACAATGAGTAGACTGAGCCATGATGCAGATGCGGAAEST: gi|4714419|gb|AU058386.1|AU058386
genomic: GAAGGGCGGTTCCTCTAGCTCTGGGTTTGCTTTGCATATCCAATCCAAAGgtaacagttc ... tgtcaattagGTAAATGTTATGGACACAATGAGTAGACTGAGCCATGATGCAGATGCGGAA
EST: GAAGGGCGGTTCCTCTAGCTCTGGGTTTGCTTTGCATATCCAATCCAAAG GTAAATGTTATGGACACAATGAGTAGACTGAGCCATGATGCAGATGCGGAA
genomic: GAAGGGCGGTTCCTCTAGCTCTGGGTTTGCTTTGCATATCCAATCCAAAGgtaacagttc ... tgtcaattagGTAAATGTTATGGACACAATGAGTAGACTGAGCCATGATGCAGATGCGGAA
aatatcttatctagttttctgatgtctacatttctaccacttgcctgtcaattagGTAAATGTTATGGACACAATGAGTAGACTGAGCCATGATGCAGATGCGGAAGTTTCTATG
ttctgat putative branch site (score: 10)
cttgcct putative PPT
ttatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggttattcgaggaaaattagtagattgtatcatttggctagataaatatcttatctagttttctgatgtctacatttctaccacttgcctgtcaattagGTAAATGTTATGGACACAATGAGTAGACTGAGCCATGATGCAGATGCGGAAGTTTCTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - aggaaaa
- - - - - - - - - - - - - - - tcatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacttgc