1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...acttggatcagcaaatattctgtctgtagtagcgctggaatataattccccaagtttgtcctccatgtactgaaatgactgatgtgtgtgagttttccagGGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTCACTGCAGACGAAATGCAGACATTGACAAACAACCTTTGCTACAC
species | Oryza sativa |
transcript | LOC_Os06g39640.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: GCCACCCATCAGAGTTTGATTTCTACCTCTGTAGCCATGCTGGAATTCAG GGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTCEST: gi|86435965|gb|CI107198.1|CI107198
genomic: GCCACCCATCAGAGTTTGATTTCTACCTCTGTAGCCATGCTGGAATTCAGgtaagaatat ... agttttccagGGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTC
EST: TGTAGCCATGCTGCAATTCAG GGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTCEST: gi|87016539|gb|CI273749.1|CI273749
genomic: TGTAGCCATGCTGGAATTCAGgtaagaatat ... agttttccagGGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTC
EST: AGCCATGCTGGAATTCAG GGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTCEST: gi|29636941|gb|CB641950.1|CB641950
genomic: AGCCATGCTGGAATTCAGgtaagaatat ... agttttccagGGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTC
EST: GCCACCCATCAGAGTTTGATTTCTACCTCTGTAGCCATGCTGGAATTCAG GGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTCEST: gi|86594915|gb|CI258169.1|CI258169
genomic: GCCACCCATCAGAGTTTGATTTCTACCTCTGTAGCCATGCTGGAATTCAGgtaagaatat ... agttttccagGGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTC
EST: TCTGTAGCCATGCTGGAATTCAG GGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTCEST: gi|29674861|gb|CB671136.1|CB671136
genomic: TCTGTAGCCATGCTGGAATTCAGgtaagaatat ... agttttccagGGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTC
EST: GCCACCCATCAGAGTTTGATTTCTACCTCTGTAGCCATGCTGGAATTCAG GGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTCEST: gi|88906357|gb|CI375429.1|CI375429
genomic: GCCACCCATCAGAGTTTGATTTCTACCTCTGTAGCCATGCTGGAATTCAGgtaagaatat ... agttttccagGGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTC
EST: GCCACCCATCAGAGTTTGATTTGTACCTCTGTAGCCATGCTGGAATTCAG GGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTCEST: gi|8404400|gb|AU091754.1|AU091754
genomic: GCCACCCATCAGAGTTTGATTTCTACCTCTGTAGCCATGCTGGAATTCAGgtaagaatat ... agttttccagGGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTC
EST: GCCACCCATCAGAGTTTGATTTCTACCTCTGTAGCCATGCTGGAATTCAG GGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTCEST: gi|86431420|gb|CI085031.1|CI085031
genomic: GCCACCCATCAGAGTTTGATTTCTACCTCTGTAGCCATGCTGGAATTCAGgtaagaatat ... agttttccagGGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTC
EST: TGTAGCCATGCTGGAATTCAG GGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTCEST: gi|86477748|gb|CI120381.1|CI120381
genomic: TGTAGCCATGCTGGAATTCAGgtaagaatat ... agttttccagGGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTC
EST: GCCACCCATCAGAGTGTGATTTCTACCTCTGTAGCCATGCTGGAATTCAG GGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTCEST: gi|29636972|gb|CB641981.1|CB641981
genomic: GCCACCCATCAGAGTTTGATTTCTACCTCTGTAGCCATGCTGGAATTCAGgtaagaatat ... agttttccagGGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTC
EST: GCCACCCATCAGAGTTTGATTTATACCTCTGTAGCCATGCTGGAATTCAG GGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTCEST: gi|27576993|gb|CA999687.1|CA999687
genomic: GCCACCCATCAGAGTTTGATTTCTACCTCTGTAGCCATGCTGGAATTCAGgtaagaatat ... agttttccagGGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTC
EST: GCCACCCATCAGAGTTTGATTTCTACCTCTGTAGCCATGCTGGAATTCAG GGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTC
genomic: GCCACCCATCAGAGTTTGATTTCTACCTCTGTAGCCATGCTGGAATTCAGgtaagaatat ... agttttccagGGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTC
ttccccaagtttgtcctccatgtactgaaatgactgatgtgtgtgagttttccagGGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTCACTGCAGACGAAATGCAGACATTGACAAACAACCTTTGCTACAC
gactgat putative branch site (score: 5)
ttttcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttggatcagcaaatattctgtctgtagtagcgctggaatataattccccaagtttgtcctccatgtactgaaatgactgatgtgtgtgagttttccagGGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTCACTGCAGACGAAATGCAGACATTGACAAACAACCTTTGCTACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - cagcaaa
- - - - - - - - - -ctgtctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatgt