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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctgtttttcagttttcatatgatatacattgtgagtttattattttatctggaggtatccatattttgcaatcaaataagcattgttactttcatatagGGTTGGTGGTTGCCGCAACTCCTTGGAATTGACATTACCATCTAGGAGTGCTCAG

Basic information

species Oryza sativa
transcript LOC_Os06g26234.1
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89193939|gb|CI018257.1|CI018257
EST:     TATATGAAAAGAACCAGTGACAATAG                         GGTTGGTGGTTGCCGCAACTCCTTGGAATTGACATTACCATCTAGGAGTGC
genomic: TATATGAAAAGAACCAGTGACAATAGgtgctgtttt ... tttcatatagGGTTGGTGGTTGCCGCAACTCCTTGGAATTGACATTACCATCTAGGAGTGC
EST: gi|58681802|gb|CK070489.1|CK070489
EST:     CGTGGGGAGCTGACGAGCAATCAATATATGAAAAGAACCAGTGACAATAG                         GGTTGGTGGTTGCCGCAACTCCTTGGAATTGACATTACCATCTAGGAGTGC
genomic: CGTGGGGAGCTGACGAGCAATCAATATATGAAAAGAACCAGTGACAATAGgtgctgtttt ... tttcatatagGGTTGGTGGTTGCCGCAACTCCTTGGAATTGACATTACCATCTAGGAGTGC
EST: gi|29639222|gb|CB644231.1|CB644231
EST:     CGTGGGGAGCTGACGAGCAATCAATATATGAAAAGAACCAGTGACAATAG                         GGTTGGTGGTTGCCGCAACTCCTTGGAATTGACATTACCATCTAGGAGTGC
genomic: CGTGGGGAGCTGACGAGCAATCAATATATGAAAAGAACCAGTGACAATAGgtgctgtttt ... tttcatatagGGTTGGTGGTTGCCGCAACTCCTTGGAATTGACATTACCATCTAGGAGTGC
EST: gi|29639178|gb|CB644187.1|CB644187
EST:     CGTGGGGAGCTGACGAGCAATCAATATATGAAAAGAACCAGTGACAATAG                         GGTTGGTGGTTGCCGCAACTCCTTGGAATTGACATTACCATCTAGGAGTGC
genomic: CGTGGGGAGCTGACGAGCAATCAATATATGAAAAGAACCAGTGACAATAGgtgctgtttt ... tttcatatagGGTTGGTGGTTGCCGCAACTCCTTGGAATTGACATTACCATCTAGGAGTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatctggaggtatccatattttgcaatcaaataagcattgttactttcatatagGGTTGGTGGTTGCCGCAACTCCTTGGAATTGACATTACCATCTAGGAGTGCTCAG
                                         ttactttc  CT-rich tract
                         aatcaaataa  TA-rich tract