1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtttacattaaaaaaaagctagcattgctcatttcattggaccctgtcattgtggcaatgttcttattgttttttccccttctcttatcagGCTATTGTGTTGTGCCAAGTGGAGAAGGCAAAGGAAGATATGCTAAACCAGCTATATAGTTCAATAAG
species | Oryza sativa |
transcript | LOC_Os06g13820.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: CTGTTTTGAATAGTCTGGCAGCAAATGTCCCAAAG GCTATTGTGTTGTGCCAAGTGGAGAAGGCAAAGGAAGATATGCTAAACCAGEST: gi|325493116|gb|JG457640.1|JG457640
genomic: CTGTTTTGAATAGTCTGGCAGCAAATGTCCCAAAGgtttacatta ... ctcttatcagGCTATTGTGTTGTGCCAAGTGGAGAAGGCAAAGGAAGATATGCTAAACCAG
EST: GTGGTTATGTTGAGGCTGTATTGAATAGTCTGGCAGCAAATGTCCCAAAG GCTATTGTGTTGTGCCAAGTGGAEST: gi|29614012|gb|CB619025.1|CB619025
genomic: GTGGTTATGTTGAGGCTGTTTTGAATAGTCTGGCAGCAAATGTCCCAAAGgtttacatta ... ctcttatcagGCTATTGTGTTGTGCCAAGTGGA
EST: GTGGTTATGTTGAGGCTGTTTTGAATAGTCTGGCAGCAAATGTCCCAAAG GCTATTGTGTTGTGCCAAGTGGAGAAGGCAAAGGAAGATATGCTAAACCAGEST: gi|29657562|gb|CB653837.1|CB653837
genomic: GTGGTTATGTTGAGGCTGTTTTGAATAGTCTGGCAGCAAATGTCCCAAAGgtttacatta ... ctcttatcagGCTATTGTGTTGTGCCAAGTGGAGAAGGCAAAGGAAGATATGCTAAACCAG
EST: GTGGTTATGTTGAGGCTGTTTTGAATAGTCTGGCAGCAAATGTCCCAAAG GCTATTGTGTTGTGCCAAGTGGAGAAGGCAAAGGAAGATATGCTAAACCAGEST: gi|58652777|gb|CK041457.1|CK041457
genomic: GTGGTTATGTTGAGGCTGTTTTGAATAGTCTGGCAGCAAATGTCCCAAAGgtttacatta ... ctcttatcagGCTATTGTGTTGTGCCAAGTGGAGAAGGCAAAGGAAGATATGCTAAACCAG
EST: GTGGTTATGTTGAGGCTGTTTTGAATAGTCTGGCAGCAAATGTCCCAAAG GCTATTGTGTTGTGCCEST: gi|86482222|gb|CI124855.1|CI124855
genomic: GTGGTTATGTTGAGGCTGTTTTGAATAGTCTGGCAGCAAATGTCCCAAAGgtttacatta ... ctcttatcagGCTATTGTGTTGTGCC
EST: GTGGTTATGTTGAGGCTGTTTTGAATAGTCTGCCAGCAAATGTCCCAAAG GCTATTGTGTTGTGCCAAGTGGAGAAGGCAAAGGAAGATATGCTAAACCAGEST: gi|218497504|gb|FG955306.1|FG955306
genomic: GTGGTTATGTTGAGGCTGTTTTGAATAGTCTGGCAGCAAATGTCCCAAAGgtttacatta ... ctcttatcagGCTATTGTGTTGTGCCAAGTGGAGAAGGCAAAGGAAGATATGCTAAACCAG
EST: GTGGTTATGTTGAGGCTGTTTTGAATAGTCTGGCAGCAAATGTCCCAAAG GCTATTGTGTTGTGCCAAGTGGAGAAGGCAAAGGAAGATATGCTAAACCAGEST: gi|29622848|gb|CB627859.1|CB627859
genomic: GTGGTTATGTTGAGGCTGTTTTGAATAGTCTGGCAGCAAATGTCCCAAAGgtttacatta ... ctcttatcagGCTATTGTGTTGTGCCAAGTGGAGAAGGCAAAGGAAGATATGCTAAACCAG
EST: GTGGTTATGTTGAGGCTGTTTTGAATAGTCTGGCAGCAAATGTCCCAAAG GCTATTGTGTTGTGCCAAGTGGAGAAGGCAAAGGAAGATATGCTAAACCAGEST: gi|25798429|gb|CA754390.1|CA754390
genomic: GTGGTTATGTTGAGGCTGTTTTGAATAGTCTGGCAGCAAATGTCCCAAAGgtttacatta ... ctcttatcagGCTATTGTGTTGTGCCAAGTGGAGAAGGCAAAGGAAGATATGCTAAACCAG
EST: GTGGTTATGTTGAGGCTGTTTTGAATAGTCTGGCAGCAAATGTCCCAAAG GCTATTGTGTTGTGCCAAGTGGAGAAGGCAAAGGAAGATATGCTAAACCAG
genomic: GTGGTTATGTTGAGGCTGTTTTGAATAGTCTGGCAGCAAATGTCCCAAAGgtttacatta ... ctcttatcagGCTATTGTGTTGTGCCAAGTGGAGAAGGCAAAGGAAGATATGCTAAACCAG
ttggaccctgtcattgtggcaatgttcttattgttttttccccttctcttatcagGCTATTGTGTTGTGCCAAGTGGAGAAGGCAAAGGAAGATATGCTAAACCAGCTATATAGTTCAATAAG
tgttcttattgttttt CT-rich tract
ttcttattgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttacattaaaaaaaagctagcattgctcatttcattggaccctgtcattgtggcaatgttcttattgttttttccccttctcttatcagGCTATTGTGTTGTGCCAAGTGGAGAAGGCAAAGGAAGATATGCTAAACCAGCTATATAGTTCAATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA