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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccatttactgcaaactatttaataactcaaatcccattctgtttatgtggtcatcaattcttacacttaaatggatcagCTGCGGACGGTGCACAAGCTTACTATGAAACTGAAGCGCGAAATTGTCCTGGGATCTTCTAGCATAGATGACCCTCCACAATTTATTTCG

Basic information

species Oryza sativa
transcript LOC_Os06g04450.1
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g04450.2 (Oryza sativa), 3'ss of exon 19
lower sequence: GRMZM5G830776_T01 (Zea mays), 3'ss of exon 19
gtaagccatttactgcaa--act--atttaataactcaaatcccattctgttt---atgtggtcatcaattctta-cacttaa-atggatcagCTGCGGACGGTGCACAAGCTTACTATGAAACTGAAGCGCGAAATTGTCCTGGGATCTTCTAGCATAGATGACCCTCCACAATTTATTTCG
||| ||||| | ||   |  |||  ||| || ||   || ||||| |||| ||   || |  |   |  |  ||| || || | ||| |||||||||| ||||||||||||||||| |||||| ||||||||||||| ||| |||| ||||||||||| ||||| ||||| || |||||||||
gtacgccatgtgcttatactactgcattaaaaaaacgaattcccaatctggttggcatattatatactgtatttatcatttcatatgaatcagCTGCGCACGGTGCACAAGCTTACAATGAAAATGAAGCGCGAAATCGTCTTGGGCTCTTCTAGCATCGATGATCCTCCGCAGTTTATTTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86486040|gb|CI128673.1|CI128673
EST:     TAGGCAACCGAATTTTTGTCTTCATGATTGGTGGAGCCACTAGATCGGAA                         CTGCGGACGGTGCACAAGCTTACTATGAAACTGAAGCGCGAAATTGTCCTG
genomic: TAGGCAACCGAATTTTTGTCTTCATGATTGGTGGAGCCACTAGATCGGAAgtaagccatt ... aatggatcagCTGCGGACGGTGCACAAGCTTACTATGAAACTGAAGCGCGAAATTGTCCTG
EST: gi|88257802|gb|CI360388.1|CI360388
EST:     GCCACTAGATCGG-A                         CTGCGGAC-GTGCACAAGCTTACTATGAAACTGAAGCGCGAAATTGTCCTG
genomic: GCCACTAGATCGGAAgtaagccatt ... aatggatcagCTGCGGACGGTGCACAAGCTTACTATGAAACTGAAGCGCGAAATTGTCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actcaaatcccattctgtttatgtggtcatcaattcttacacttaaatggatcagCTGCGGACGGTGCACAAGCTTACTATGAAACTGAAGCGCGAAATTGTCCTGGGATCTTCTAGCATAGATGACCCTCCACAATTTATTTCG
                               aattctta  TA-rich tract