1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtacgttttggatcaattggcactacttgttgcttgctatctgggggaagggattcaccatagcttgctgacggattgcccttttctattttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATCCAACGACCATGTTGCTGTAAATGAGGATGACGGGGAGAGTTATTTTTTG
species | Oryza sativa |
transcript | LOC_Os06g01630.5 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACG GTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATCEST: gi|25803971|gb|CA759932.1|CA759932
genomic: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACGgtacgttttg ... tttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATC
EST: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACG GTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATCEST: gi|29631523|gb|CB636532.1|CB636532
genomic: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACGgtacgttttg ... tttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATC
EST: TGGTTCGTTTATGTCAGCAACATTTAGTTGCGACCACCGGGTCATTGACG GTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGTTACATCGAGAATCEST: gi|88256589|gb|CI358977.1|CI358977
genomic: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACGgtacgttttg ... tttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATC
EST: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACG GTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATCEST: gi|88978612|gb|CI384953.1|CI384953
genomic: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACGgtacgttttg ... tttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATC
EST: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACG GTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATCEST: gi|58585940|gb|CF984248.1|CF984248
genomic: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACGgtacgttttg ... tttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATC
EST: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACG GTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATCEST: gi|24468761|gb|CA305710.1|CA305710
genomic: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACGgtacgttttg ... tttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATC
EST: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACG GTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATCEST: gi|86871900|gb|CI332072.1|CI332072
genomic: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACGgtacgttttg ... tttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATC
EST: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACG GTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATCEST: gi|88251940|gb|CI350368.1|CI350368
genomic: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACGgtacgttttg ... tttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATC
EST: TGGTTCGTTTATGTCAGCAACATTGAACTGCGACCACCGGGTCATTGACG GTGTCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATCEST: gi|89193198|gb|CI050496.1|CI050496
genomic: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACGgtacgttttg ... tttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATC
EST: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACG GTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATCEST: gi|86863330|gb|CI344978.1|CI344978
genomic: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACGgtacgttttg ... tttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATC
EST: GGTTCAGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACG GTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATCEST: gi|88222196|gb|CI222152.1|CI222152
genomic: GGTTC-GTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACGgtacgttttg ... tttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATC
EST: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACG GTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATCEST: gi|88247217|gb|CI247066.1|CI247066
genomic: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACGgtacgttttg ... tttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATC
EST: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACG GTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATCEST: gi|87030828|gb|CI362042.1|CI362042
genomic: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACGgtacgttttg ... tttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATC
EST: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACG GTGCCATTGGTGCAGAATGGATGAAGGCGTT-AAGGGCTACATCGAGAATCEST: gi|88257576|gb|CI360162.1|CI360162
genomic: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACGgtacgttttg ... tttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATC
EST: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACG GTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATCEST: gi|86839043|gb|CI330409.1|CI330409
genomic: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACGgtacgttttg ... tttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATC
EST: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACG GTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATCEST: gi|88222052|gb|CI222008.1|CI222008
genomic: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACGgtacgttttg ... tttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATC
EST: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACG GTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATCEST: gi|88449787|gb|CI539162.1|CI539162
genomic: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACGgtacgttttg ... tttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATC
EST: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACG GTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATCEST: gi|86862659|gb|CI345654.1|CI345654
genomic: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACGgtacgttttg ... tttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATC
EST: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACG GTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATCEST: gi|89198662|gb|CI016747.1|CI016747
genomic: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACGgtacgttttg ... tttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATC
EST: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACG GTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATCEST: gi|86825407|gb|CI360045.1|CI360045
genomic: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACGgtacgttttg ... tttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATC
EST: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACG GTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATCEST: gi|88416802|gb|CI546081.1|CI546081
genomic: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACGgtacgttttg ... tttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATC
EST: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACG GTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATCEST: gi|86835039|gb|CI346519.1|CI346519
genomic: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACGgtacgttttg ... tttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATC
EST: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACG GTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATCEST: gi|88268103|gb|CI378875.1|CI378875
genomic: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACGgtacgttttg ... tttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATC
EST: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACAGGGTCATTGACG GTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATC
genomic: TGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACGgtacgttttg ... tttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATC
gggaagggattcaccatagcttgctgacggattgcccttttctattttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATCCAACGACCATGTTGCTGTAAATGAGGATGACGGGGAGAGTTATTTTTTG
tgctgac putative branch site (score: 2)
ttgcccttttctattt putative PPT
ttttctatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgttttggatcaattggcactacttgttgcttgctatctgggggaagggattcaccatagcttgctgacggattgcccttttctattttctggcagGTGCCATTGGTGCAGAATGGATGAAGGCGTTCAAGGGCTACATCGAGAATCCAACGACCATGTTGCTGTAAATGAGGATGACGGGGAGAGTTATTTTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG