1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtaactaggcaattgaaattcttttagatcagatgagaatattattctgctatttgaatttatgagatcatgatgttgtgtacaatatgtagGGTGTGTTGCACTGGGTTGCCGAACCTTCTCCAGGTGTTAACCCGCTCAAAGTGGAAATCAGATTGTTCGAGAAATTATTTCTTTCAGAG
species | Oryza sativa |
transcript | LOC_Os05g08990.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: TCATTGAAATCCGAGCTGAGTATGACCCTTCGAAGGCTACAAAACCAAAG GGTGTGTTGCACTGGGTTGCCGAACCTTCTCCAGGTGTTAACCCGCTCAAAEST: gi|88259382|gb|CI363675.1|CI363675
genomic: TCATTGAAATCCGAGCTGAGTATGACCCTTCGAAGGCTACAAAACCAAAGgtaactaggc ... caatatgtagGGTGTGTTGCACTGGGTTGCCGAACCTTCTCCAGGTGTTAACCCGCTCAAA
EST: CGAAGGCTACAAAACCAAAG GGTGTGTTGCACTGGGTTGCCGAACCTTCTCCAGGTGTTAACCCGCTCAAAEST: gi|89195040|gb|CI051153.1|CI051153
genomic: CGAAGGCTACAAAACCAAAGgtaactaggc ... caatatgtagGGTGTGTTGCACTGGGTTGCCGAACCTTCTCCAGGTGTTAACCCGCTCAAA
EST: TCATTGAAATCCGAGCTGAGTATGACCCTTCGAAGGCTACAAAACCAAAG GGTGTGTTGCACTGGGTTGCCGAACCTTCTCCAGGTGTTAACCCGCTCAAAEST: gi|87022785|gb|CI269721.1|CI269721
genomic: TCATTGAAATCCGAGCTGAGTATGACCCTTCGAAGGCTACAAAACCAAAGgtaactaggc ... caatatgtagGGTGTGTTGCACTGGGTTGCCGAACCTTCTCCAGGTGTTAACCCGCTCAAA
EST: TCATTGAAATCCGAGCTGAGTATGACCCTTCGAAGGCTACAAAACCAAAG GGTGTGTTGCACTGGGTTGCCGAACCTTCTCCAGGTGTTAACCCGCTCAAAEST: gi|89189666|gb|CI049205.1|CI049205
genomic: TCATTGAAATCCGAGCTGAGTATGACCCTTCGAAGGCTACAAAACCAAAGgtaactaggc ... caatatgtagGGTGTGTTGCACTGGGTTGCCGAACCTTCTCCAGGTGTTAACCCGCTCAAA
EST: TCATTGAAATCCGAGCTGAGTATGACCCTTCGAAGGCTACAAAACCAAAG GGTGTGTTGCACTGGGTTGCCGAACCTTCTCCAGGTGTTAACCCGCTCAAAEST: gi|86437465|gb|CI119187.1|CI119187
genomic: TCATTGAAATCCGAGCTGAGTATGACCCTTCGAAGGCTACAAAACCAAAGgtaactaggc ... caatatgtagGGTGTGTTGCACTGGGTTGCCGAACCTTCTCCAGGTGTTAACCCGCTCAAA
EST: TCATTGAAATCCGAGCTGAGTATGACCCTTCGAAGGCTACAAAACCAAAG GGTGTGTTGCACTGGGTTGCCGAACCTTCTCCAGGTGTTAACCCGCTCAAAEST: gi|86487083|gb|CI129716.1|CI129716
genomic: TCATTGAAATCCGAGCTGAGTATGACCCTTCGAAGGCTACAAAACCAAAGgtaactaggc ... caatatgtagGGTGTGTTGCACTGGGTTGCCGAACCTTCTCCAGGTGTTAACCCGCTCAAA
EST: CGAGCTGAGTATGACCCTTCGAAGGCTACAAAACCAAAG GGTGTGTTGCACTGGGTTGCCGAACCTTCTCCAGGTGTTAACCCGCTCAAAEST: gi|87022805|gb|CI269741.1|CI269741
genomic: CGAGCTGAGTATGACCCTTCGAAGGCTACAAAACCAAAGgtaactaggc ... caatatgtagGGTGTGTTGCACTGGGTTGCCGAACCTTCTCCAGGTGTTAACCCGCTCAAA
EST: TCATTGAAATCCGAGCTGAGTATGACCCTTCGAAGGCTACGAAACCAAAG GGTGTGTTGCACTGGGTTGCCGAACCTTCTCCAGGTGTTAACCCGCTCAAAEST: gi|88971448|gb|CI017762.1|CI017762
genomic: TCATTGAAATCCGAGCTGAGTATGACCCTTCGAAGGCTACAAAACCAAAGgtaactaggc ... caatatgtagGGTGTGTTGCACTGGGTTGCCGAACCTTCTCCAGGTGTTAACCCGCTCAAA
EST: TCATTGAAATCCGAGCTGAGTATGACCCTTCGAAGGCTACAAAACCAAAG GGTGTGTTGCACTGGGTTGCCGAACCTTCTGCAGGTGTTAACCCGCTCAAAEST: gi|86481762|gb|CI124395.1|CI124395
genomic: TCATTGAAATCCGAGCTGAGTATGACCCTTCGAAGGCTACAAAACCAAAGgtaactaggc ... caatatgtagGGTGTGTTGCACTGGGTTGCCGAACCTTCTCCAGGTGTTAACCCGCTCAAA
EST: TCATTGAAATCCGAGCTGAGTATGACCCTTCGAAGGCTACAAAACCAAAG GGTGTGTTGCACTGGGTTGCCGAACCTTCTCCAGGTGTTAACCCGCTCAAAEST: gi|86481706|gb|CI124339.1|CI124339
genomic: TCATTGAAATCCGAGCTGAGTATGACCCTTCGAAGGCTACAAAACCAAAGgtaactaggc ... caatatgtagGGTGTGTTGCACTGGGTTGCCGAACCTTCTCCAGGTGTTAACCCGCTCAAA
EST: TCATTGAAATCCGAGCTGAGTATGACCCTTCGAAGGCTACAAAACCAAAG GGTGTGTTGCACTGGGTTGCCGAACCTTCTCCAGGTGTTAACCCGCTCAAA
genomic: TCATTGAAATCCGAGCTGAGTATGACCCTTCGAAGGCTACAAAACCAAAGgtaactaggc ... caatatgtagGGTGTGTTGCACTGGGTTGCCGAACCTTCTCCAGGTGTTAACCCGCTCAAA
aatattattctgctatttgaatttatgagatcatgatgttgtgtacaatatgtagGGTGTGTTGCACTGGGTTGCCGAACCTTCTCCAGGTGTTAACCCGCTCAAAGTGGAAATCAGATTGTTCGAGAAATTATTTCTTTCAGAG
tatttgaatttatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactaggcaattgaaattcttttagatcagatgagaatattattctgctatttgaatttatgagatcatgatgttgtgtacaatatgtagGGTGTGTTGCACTGGGTTGCCGAACCTTCTCCAGGTGTTAACCCGCTCAAAGTGGAAATCAGATTGTTCGAGAAATTATTTCTTTCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA