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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggactgtccatttgttatactttggcttttggtcatctgataatcttattctctagatagatcagctatcaaaagaagttctgtggtgataaatagatgagttggaggctatttacaaaattactacacattgctgaatgtgaccgtgattccgcgaacatgtactgcagGTCCAAACAGCAGTAGGTAACCTTCGAGAGAGCGCTGTAAACCGCACAAGTCACCTACAGAATGAAATTTCAACTGCCCAGGACTTCACTTCGTCCGTGC

Basic information

species Oryza sativa
transcript LOC_Os05g02670.2
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g02670.1 (Oryza sativa), 3'ss of exon 18
lower sequence: GRMZM2G024576_T01 (Zea mays), 3'ss of exon 17
gtaaggactgtccatttgttatactttggcttttggtcatctgataatcttattctctagatagatcagctatcaaaagaagttctgtggtgataaatagatgagttggaggctatttacaaaattactacacattgctga-atgtgaccgtgattccgcgaacatgtactgcagGTCCAAACAGCAGTAGGTAACCTTCGAGAGAGCGCTGTAAACCGCACAAGTCACCTACAGAATGAAATTTCAACTGCCCAGGACTTCACTTCGTCCGTGC
                 || |   |||   |||  ||  | | |  | ||||  ||     |     | | |||  |  ||            ||||  || | | |  |    |      |   |   |||| |  |||  |||  | |||     |  || || | | ||||||||||||||||||| || | ||| || |||||||| || ||| | || || ||||| ||||| ||||| || || ||||||||||| || ||||||||||
-----------------gtgagcgtttttttttcagttgtttcaacagcttaaactt---gtttcgtacccatctgactaaaacacacca-agtaaac-gacgtgctataaaaaagaagtgatgctctcacacctctctgctatgccaacgtttcatcatgagcacgcattgcagGTCCAAACAGCAGTGGGCAGCCTCCGGGAGAGCGCCGTGAACAGAACGAGCCACCTGCAGAAAGAAATCTCGACGGCCCAGGACTTGACCTCGTCCGTGC