1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtaggtgtcacttacctattggaatatctggtgttgaataaataacaactgtatatttcaaccttgtattgttctatttacaatgatacggaaactcaacggcaatccagGTAACGGGTCTAGTGCTTCTAATCTGCTGGATGATCACCTGAAGACAATTCTAGTGAATGTTCGGTTGGTCTATCTTCTAGAAAGAGAAGGATGGGACTC
species | Oryza sativa |
transcript | LOC_Os05g01700.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: CAGAGATGAAGATTTGTTCGTTATACAATGATG GTAACGGGTCTAGTGCTTCTAATCTGCTGGATGATCACCTGAAGACCATTCEST: gi|86437286|gb|CI119008.1|CI119008
genomic: CAGAGATGAAGATTTGTTCGTTATACAATGATGgtaggtgtca ... ggcaatccagGTAACGGGTCTAGTGCTTCTAATCTGCTGGATGATCACCTGAAGACAATTC
EST: GTGCTCAAGGGAGGAAGCAGAGATGAAGATTTGTTCGTTATACCATGATG GTAACGGGTCTAGTGCTTCTAATCTGCTGGATGATCACCTGAAGACAATTCEST: gi|300216062|gb|HO088688.1|HO088688
genomic: CT-CTCAAGGGAGGAAGCAGAGATGAAGATTTGTTCGTTATACAATGATGgtaggtgtca ... ggcaatccagGTAACGGGTCTAGTGCTTCTAATCTGCTGGATGATCACCTGAAGACAATTC
EST: TCTCTCAAGGGAGGAAGCAGAGATGAAGATTTGTTCGTTATACAATGATG GTAACGGGTCTAGTGCTTCTAATCTGCTGGATGATCACCTGAAGACAATTCEST: gi|86251544|gb|CI016833.1|CI016833
genomic: TCTCTCAAGGGAGGAAGCAGAGATGAAGATTTGTTCGTTATACAATGATGgtaggtgtca ... ggcaatccagGTAACGGGTCTAGTGCTTCTAATCTGCTGGATGATCACCTGAAGACAATTC
EST: TCTCTCAAGGGAGGAAGCAGAGATGAAGATTTGTTCGTTATACAATGATG GTAACGGGTCTAGTGCTTCTAATCTGCTGGATGATCACCTGAAGACAATTCEST: gi|88975781|gb|CI024032.1|CI024032
genomic: TCTCTCAAGGGAGGAAGCAGAGATGAAGATTTGTTCGTTATACAATGATGgtaggtgtca ... ggcaatccagGTAACGGGTCTAGTGCTTCTAATCTGCTGGATGATCACCTGAAGACAATTC
EST: TCTCTCAAGGGAGGAAGCAGAGATGAAGATTTGTTCGTTATACAATGATG GTAACGGGTCTAGTGCTTCTAATCTGCTGGATGATCACCTGAAGACCATTCEST: gi|29685003|gb|CB681278.1|CB681278
genomic: TCTCTCAAGGGAGGAAGCAGAGATGAAGATTTGTTCGTTATACAATGATGgtaggtgtca ... ggcaatccagGTAACGGGTCTAGTGCTTCTAATCTGCTGGATGATCACCTGAAGACAATTC
EST: TCTCTCAAGGGAGGAAGCAGAGATGAAGATTTGTTCGTTATACAATGATG GTAACGGGTCTAGTGCTTCTAATCTGCTGGATGATCACCTGAAGACAATTCEST: gi|86902061|gb|CI300300.1|CI300300
genomic: TCTCTCAAGGGAGGAAGCAGAGATGAAGATTTGTTCGTTATACAATGATGgtaggtgtca ... ggcaatccagGTAACGGGTCTAGTGCTTCTAATCTGCTGGATGATCACCTGAAGACAATTC
EST: TCGTTATACAATGATG GTAACGGGTCTAGTGCTTCTAATCTGCTGGATGATCACCTGAAGACAATTC
genomic: TCGTTATACAATGATGgtaggtgtca ... ggcaatccagGTAACGGGTCTAGTGCTTCTAATCTGCTGGATGATCACCTGAAGACAATTC
tttcaaccttgtattgttctatttacaatgatacggaaactcaacggcaatccagGTAACGGGTCTAGTGCTTCTAATCTGCTGGATGATCACCTGAAGACAATTCTAGTGAATGTTCGGTTGGTCTATCTTCTAGAAAGAGAAGGATGGGACTC
tattgttctattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtgtcacttacctattggaatatctggtgttgaataaataacaactgtatatttcaaccttgtattgttctatttacaatgatacggaaactcaacggcaatccagGTAACGGGTCTAGTGCTTCTAATCTGCTGGATGATCACCTGAAGACAATTCTAGTGAATGTTCGGTTGGTCTATCTTCTAGAAAGAGAAGGATGGGACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG