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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaacttctaccgcaccaaattgcaatttacccagcttttacactcgctgcttggacttgatgtaggataagtggagctgtcataattaatactatttgctttcttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGATTTTGTTCTAGTACTGTAGTAATCTCCATCCCCCCTAATATATGCGATTC

Basic information

species Oryza sativa
transcript LOC_Os04g52960.1
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86484823|gb|CI127456.1|CI127456
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88907143|gb|CI089937.1|CI089937
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|86432250|gb|CI085861.1|CI085861
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|86524083|gb|CI164289.1|CI164289
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88849978|gb|CI091273.1|CI091273
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|22018996|gb|AF522009.1|AF522009
EST:     GGTACACCTAGTGCAG                         GAAGGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: GGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88906711|gb|CI375783.1|CI375783
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCCCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|86434931|gb|CI106164.1|CI106164
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|66924192|gb|CX111040.1|CX111040
EST:     TGGTGGACGGTGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|86431692|gb|CI085303.1|CI085303
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|87035303|gb|CI189925.1|CI189925
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88264425|gb|CI368199.1|CI368199
EST:     TGGTTGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTATTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|87038432|gb|CI193054.1|CI193054
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88375931|gb|CI528235.1|CI528235
EST:     GGTGGACGGGGTACACCGTTCAAGCAGAGGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGAGGACTAGACGAACAATTTGAGCCGAT
genomic: GGTGGACGGGGTACACCGTTCAAGCAGA-GCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88234129|gb|CI233978.1|CI233978
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|86426313|gb|CI071410.1|CI071410
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88906317|gb|CI375389.1|CI375389
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|87038991|gb|CI193613.1|CI193613
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88903060|gb|CI088598.1|CI088598
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCAAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|87037978|gb|CI192600.1|CI192600
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCGG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|89188615|gb|CI115864.1|CI115864
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|87031722|gb|CI272423.1|CI272423
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|86432379|gb|CI085990.1|CI085990
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88840808|gb|CI080262.1|CI080262
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|86427829|gb|CI072926.1|CI072926
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88850214|gb|CI091707.1|CI091707
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|87022099|gb|CI259171.1|CI259171
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88271934|gb|CI387987.1|CI387987
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAAATTTGAGCCGA
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAA-TTTGAGCCGA
EST: gi|86433980|gb|CI094323.1|CI094323
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|89173761|gb|CI041654.1|CI041654
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88908252|gb|CI090845.1|CI090845
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAATAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|89184302|gb|CI046867.1|CI046867
EST:     GCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: GCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|86527062|gb|CI167268.1|CI167268
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGGACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88964779|gb|CI084777.1|CI084777
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTGCACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|87037115|gb|CI191737.1|CI191737
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGCGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|86487265|gb|CI129898.1|CI129898
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGGCAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88828888|gb|CI073758.1|CI073758
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88272232|gb|CI386686.1|CI386686
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|86542202|gb|CI182408.1|CI182408
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88219426|gb|CI218986.1|CI218986
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88902370|gb|CI087908.1|CI087908
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|58654637|gb|CK043317.1|CK043317
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|89183532|gb|CI046097.1|CI046097
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|87025645|gb|CI250139.1|CI250139
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|86426703|gb|CI071800.1|CI071800
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|87016461|gb|CI273671.1|CI273671
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88213141|gb|CI212990.1|CI212990
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88233418|gb|CI233267.1|CI233267
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|86481002|gb|CI123635.1|CI123635
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|29667433|gb|CB663708.1|CB663708
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88903478|gb|CI089016.1|CI089016
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|89183285|gb|CI045850.1|CI045850
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|86489032|gb|CI131665.1|CI131665
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|87036425|gb|CI191047.1|CI191047
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88848221|gb|CI086743.1|CI086743
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|89186123|gb|CI047992.1|CI047992
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|87041050|gb|CI195672.1|CI195672
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGCGCAG                         GAAAGAAGACTACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88848362|gb|CI086884.1|CI086884
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|89181172|gb|CI045255.1|CI045255
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|86412735|gb|CI067140.1|CI067140
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88968169|gb|CI098411.1|CI098411
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|87041228|gb|CI195850.1|CI195850
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCGG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88829548|gb|CI074418.1|CI074418
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88955480|gb|CI091572.1|CI091572
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|89188402|gb|CI115651.1|CI115651
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|87037186|gb|CI191808.1|CI191808
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGCGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|86431892|gb|CI085503.1|CI085503
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88902753|gb|CI088291.1|CI088291
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|86491865|gb|CI134498.1|CI134498
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88955389|gb|CI091481.1|CI091481
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|87042161|gb|CI194785.1|CI194785
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGCACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|86525595|gb|CI165801.1|CI165801
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|87036541|gb|CI191163.1|CI191163
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88198885|gb|CI197282.1|CI197282
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCGG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88236525|gb|CI235727.1|CI235727
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
EST: gi|88850131|gb|CI091426.1|CI091426
EST:     TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAG                         GAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT
genomic: TGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 68 (downstream exon)
Score: 111

CGCGGTGACCGTGGACGTGGTAGAGGCTTTGGTAGGGGTGACAGGGGCCATGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGgtaaaacttc ... ttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGATTTTGTTCTAGTACTGTAGTAATCTCCATCCCCCCTAATATATGCGATTC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgtaggataagtggagctgtcataattaatactatttgctttcttatctgcagGAAAGAAGACAACATTCGGTGACGACGACTAGACGAACAATTTGAGCCGATTTTGTTCTAGTACTGTAGTAATCTCCATCCCCCCTAATATATGCGATTC
                         aattaat  putative branch site (score: 111)
                                    tttgctttcttatct  putative PPT
                       ataattaatactattt  TA-rich tract